Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1939 ATGGCCACAGTCGCCACCACCGCTCCACCGTCAGCTCCGCCGCCACAAGCCCTAAAATTGGAGTCCCTTGCTCGCATTGACACCACCACTCTCTCCCAGTCCGAGCTCCAAGCTCTCTCTCTCTGCTCACTCTCCGCCTTCGACCTCCGCTCTACCACCAACCTCGTTTTCCCCCATGTCGATCGTTCACTCTTCAATGAGAGCGCTGGCTCTCGCCGCCAGACCTACTCTCGACCACGCAAACCCCTTTCTCCTTCTGACTCCCCAACCGGCCGCCGCCGCCGCGTCGCCGGTCTTCTTCCAACTCCAAAGCCCCCACCTGTCCCCGATGATGACCCGGAAAACTTAGAGAACCGCAAGATTATAGATTATTTGAAGCAATTGATTAGGGAAGACCCTAAATTCGATCAAGTTGAGCTACTCCCACCTTCTGTTACCCATGAAGTTGTGCCGGATTTGGAATTAGGGGTCGGGATGATGGAGAGCGAGGATATGGGGCTGGTAAGGAAGAGGAAGAGGGGGAGGAAGCCCAAAGTGAAGGTGCATTTGAAGGAGTGCCATGGAGAGATGGAGATTGTGAATAAGGGTGGTGTTGCCATTGATCTTTCTGCTTTGGCGAATACAGAGGATCCATTTGCTCAGGAGTTGAGCAGAAGGACTGAGGGGTTGCAGAGTGAAGAAGAGCTATTGGGGTTTTTGAGGGATTTGGGGGGACAATGGGGAAGTAGGAGGAAGAAGAGGAAGATTGTGGATGCCGGAGATTTCGGCGATGTACTGCCGGTTGGTTGGAAGCTTCTGCTGGGTTTGAAGAGAAAAGATGGTCGCGCGTGGATTTATTGCCGCAGATACATCAGTCCTAGTGGAGAACAATTTGTATCTTTCAAAGAAGTTTCTTCATATCTTCAGTACCTTTTCGGTCACAATGATGCTCAGTTACCAATCAATCATAGGGGTGAAAATATGCTGACGGACAATAGGGCGACTTCTAAAAGTTTTGCAGGTGTTACCCATGAAGAGAAGGATAAAAGGATGATCATTGCAAATGACTCAGCTCCACCCAGTTCTTCTGAATGTAATGAACGATTGAAGGATGTGGCCTTATTGGGAATCGAGAATCTTGCAGATGTGCAAATACATGACCTATTTGAATGTCACAAATGTAGCATGACATTTGATGAGAAGGATTTATACTTGCAGCACCTTTTGTCTTTCCACCAAAGGGCAACAAGGCGCTATCGACTTGGTTCTTCTGTTGGAGATGGAGTTATAATCAAAGATGGGAAATTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGACATGTGGGGATCCATGTTAGGAACTATGTGAGGAAAGCTGAAGAATCACCAGGCCAGGTAAATGTTCAAAGGAGAGATAAGTCTCCAATCAAGGAGGATTTGCCTTCAAGGATCTCTAAGATGGATGCTCTAATTGAAATTGCTCAAAACTCTATTTTGGAGAATTCTGCAATTGAAACCCTTGGTAATCATGCTTCCTCTCCTGATAAACTGAATGTAATTTCTACTACAGAAATTGCTGTTGGTAACTTAGATCTGGACAAAATTTTTGAGTCTCCTCTCAGTGAACAGCATATGGAAGATAGCATCAATTACAAAAACGTGGATCACAGTTTGAATCCCCAAGGTAGTAAACTTGCAGTCATAGATGAAGAAGTAGAGAAAACTGATGGTGGCAACAATGTTATAGATTCTAAGATGGAAACCTGTGAGGATCACATTGGTTTGTCAACTGTAAACGAGCAAAATGTTGATGCATTTGAGAATTCAAAGATGAAAGATGACGCGGGATTGACTTTTGATGGTTTGGATCGGCCCAGTGTTGATTTGGAATGTGTTTCACAAAGCCCTTTACTTCCTTCATCTGGCAATGATACAACCCCTGAAGTTGAAAAGAATCGAAATTCTGGTGACACTATTACTGTGGAGCAACTTAACCATGATGAAGATAGTAGAATTATGAATGAGTTCAAAGTTGAATTAGAAGACACAAAAGATGTATCTGTTATGTCAAAAATCCAAGAGACAACATTGCCAACTGCTGAAGAGAATACAGTGTCAGCTGAGGCTCCAACCCCATCTATGTCCATGGTACAATCTATGGATTGCTTTTCCCGTCTCACTGGACTCTCAGGTAAGGGGAAAGCCAATATTGCAGTGTTGAACACAAACATGATGACGTGA 2241 0.4507 MATVATTAPPSAPPPQALKLESLARIDTTTLSQSELQALSLCSLSAFDLRSTTNLVFPHVDRSLFNESAGSRRQTYSRPRKPLSPSDSPTGRRRRVAGLLPTPKPPPVPDDDPENLENRKIIDYLKQLIREDPKFDQVELLPPSVTHEVVPDLELGVGMMESEDMGLVRKRKRGRKPKVKVHLKECHGEMEIVNKGGVAIDLSALANTEDPFAQELSRRTEGLQSEEELLGFLRDLGGQWGSRRKKRKIVDAGDFGDVLPVGWKLLLGLKRKDGRAWIYCRRYISPSGEQFVSFKEVSSYLQYLFGHNDAQLPINHRGENMLTDNRATSKSFAGVTHEEKDKRMIIANDSAPPSSSECNERLKDVALLGIENLADVQIHDLFECHKCSMTFDEKDLYLQHLLSFHQRATRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKAEESPGQVNVQRRDKSPIKEDLPSRISKMDALIEIAQNSILENSAIETLGNHASSPDKLNVISTTEIAVGNLDLDKIFESPLSEQHMEDSINYKNVDHSLNPQGSKLAVIDEEVEKTDGGNNVIDSKMETCEDHIGLSTVNEQNVDAFENSKMKDDAGLTFDGLDRPSVDLECVSQSPLLPSSGNDTTPEVEKNRNSGDTITVEQLNHDEDSRIMNEFKVELEDTKDVSVMSKIQETTLPTAEENTVSAEAPTPSMSMVQSMDCFSRLTGLSGKGKANIAVLNTNMMT 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1939 746 ProSitePatterns Zinc finger C2H2 type domain signature. 431 451 IPR013087 -
Lele16g1939 746 ProSiteProfiles Zinc finger C2H2 type domain profile. 429 456 IPR013087 -
Lele16g1939 746 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 1 618 IPR037472 -
Lele16g1939 746 ProSitePatterns Zinc finger C2H2 type domain signature. 384 405 IPR013087 -
Lele16g1939 746 MobiDBLite consensus disorder prediction 634 656 - -
Lele16g1939 746 SMART c2h2final6 429 451 IPR013087 -
Lele16g1939 746 SMART c2h2final6 382 405 IPR013087 -
Lele16g1939 746 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 249 321 IPR001739 GO:0003677
Lele16g1939 746 MobiDBLite consensus disorder prediction 68 117 - -
Lele16g1939 746 Gene3D Classic Zinc Finger 371 454 - -
Lele16g1939 746 SUPERFAMILY DNA-binding domain 257 303 IPR016177 GO:0003677
Lele16g1939 746 MobiDBLite consensus disorder prediction 68 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1939 Lele-ChrLele16 11768674 11772453 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele16g1939 None None None