Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1933 ATGTTTGCAACAAAGGCTGTAATCGGACCCTCAAAATCATTTGATGGGCCCAAGTATCTAAGCAACACAGACGTGATTGCTTACGCTGATCAGAACTATCGTCGCCTCTATATAAATCGTCTACTTCCCCCTCATCAATACAATCCTCTTGGATTTCCACCGATTAAGCTTCCATTCCAAATGGCTTGGAGAGGCATTTTGGGTTTCGATTACGGCATAGTTCAGGCTCCTTTGGGCCCTGATATCTCTGGTCCCCATCTTGTCGCCGCCGTCGCCGACGCCGGTGCTCTCGGACTTCTCAGAGCCCCTGATTGGGAATCGCCAGATTACTTGAGAGAGCTCATAAGGAAGACTAGGACCTTAACTGACAAACCGTTTGGGGTTGGTGTTGTTCTGGCATTTCCCCATGAGGAGAACTTGAAGGTCATTTTGGAAGAAAAAGTGGCAGTCTTGCAAGTTTATTGGGGTGAATGTTCAAGGGAATTGGTAACTCAGGTTCATTCAGCTGGGGTCAAGATTGTTCCCCAAGTTGGGAGAGTAGAAGAAGCAAAGAAGGCAATTGAAGCAGGTGTGGATGGAATAATTGTACAAGGAAGGGAAGCTGGTGGTCATGTCATTGGTCAGGAATCTTTAATAGCATTGGTGCCTCGGGTGGTTGATCTTGTTGGAGACAGAGACATACCTGTTATTGCCGCTGGAGGAATTGTGGATGCACGAGGATATGTTGCTGCTCTGGCACTTGGTGCTCAAGGCATCTGCCTAGGAACTAGGTTTGTAGCTACTGAGGAAAGCTATGCTCACCCTACATACAAGAGGAAATTGGTTGAGCTCGATGAAACTGAGTACACGGATGTATTTGGCCGGGCGAGATGGCATGGCGCACCTCAGCGTGTGCTGGTGACACCTTTCTTCAATGATTGGAGATCCCTTCCACCCCATGAAAATGAAACCAATCAACCCGTCATTGGTCATTCAAAGATTAATGAATTGGAGAAAGAGATTCGACGATTCGCCGGAACGGTGCCGAACATGTCAACTACAGGGGACCTAGAGAGCATGGCGATGTATGCAGGGCAAGGTGTTGGTCTCATAAAGGAAATTCTCCCTGCCGCTCAAGTTGTAAGGAGCTTGGTTGAAGGGGCTCAGCTTCTGATCCAACAAAACCTCAATTAG 1173 0.4783 MFATKAVIGPSKSFDGPKYLSNTDVIAYADQNYRRLYINRLLPPHQYNPLGFPPIKLPFQMAWRGILGFDYGIVQAPLGPDISGPHLVAAVADAGALGLLRAPDWESPDYLRELIRKTRTLTDKPFGVGVVLAFPHEENLKVILEEKVAVLQVYWGECSRELVTQVHSAGVKIVPQVGRVEEAKKAIEAGVDGIIVQGREAGGHVIGQESLIALVPRVVDLVGDRDIPVIAAGGIVDARGYVAALALGAQGICLGTRFVATEESYAHPTYKRKLVELDETEYTDVFGRARWHGAPQRVLVTPFFNDWRSLPPHENETNQPVIGHSKINELEKEIRRFAGTVPNMSTTGDLESMAMYAGQGVGLIKEILPAAQVVRSLVEGAQLLIQQNLN 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1933 390 Gene3D Aldolase class I 63 390 IPR013785 -
Lele16g1933 390 SUPERFAMILY Inosine monophosphate dehydrogenase (IMPDH) 62 382 - -
Lele16g1933 390 Pfam Nitronate monooxygenase 66 133 IPR004136 GO:0018580
Lele16g1933 390 Pfam Nitronate monooxygenase 136 379 IPR004136 GO:0018580
Lele16g1933 390 PANTHER 2-NITROPROPANE DIOXYGENASE 60 388 - -
Lele16g1933 390 CDD NPD_like 70 294 IPR004136 GO:0018580
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1933 Lele-ChrLele16 11697689 11703449 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1933 16 11697689 11703449 Lele13g0567 13 17859346 17870802 CCT
Lele16g1933 16 11697689 11703449 Lele14g0470 14 16327244 16337673 CCT
Lele16g1933 16 11697689 11703449 Lele15g1917 15 11903105 11913865 CCT
Lele16g1933 16 11697689 11703449 Lele16g1945 16 11808042 11818298 CCT
Lele13g0580 13 18013335 18014260 Lele16g1933 16 11697689 11703449 hybridization
Lele14g0480 14 16464300 16468580 Lele16g1933 16 11697689 11703449 hybridization