Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele16g1930 | ATGGAAAATGACGACGTCGACATGCAAAGCGCCGAGAACAATGAAGCAGAATTGGATGACATGAAGAAACGTTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAAATGCAGGCCAAGGTGGAGAAGGAGATGGGCTCCGTGCAAGATCCCGCTAATGCTGCTGCAAGTCAGGCCAATAGAGAGGAAACAGATTCTCGGTCAGTCTTTGTAGGCAATGTAGACTATTCATGTACTCCTGAAGAAGTGCAGCAGCATTTCCAATCGTGTGGAACAGTAAACAGAGTCACCATTCGTACTGACAAGTTTGGCCAACCCAAGGGTTATGCTTATGTGGAGTTCCTTGAGGTAGAGGCTGTTCAGGAGGCACTTCTGCTGAACGAAACTGAACTACATGGGCGTCAGTTGAAGGTAACAGCCAAGAGGACCAACATACCCGGGATGAAGCAGTATCATCCCCGTCGGCCCAATCCTTCTATGGGGTTTCGAGGCAGAACCCCATATGCACCTCCTTTTGCCTATTCTCCATATGGATATGGGAAGGTTCCAAGGTTCAGAATGCCAATGCGTTATAGCCCATACTATTGA | 591 | 0.4822 | MENDDVDMQSAENNEAELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPANAAASQANREETDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALLLNETELHGRQLKVTAKRTNIPGMKQYHPRRPNPSMGFRGRTPYAPPFAYSPYGYGKVPRFRMPMRYSPYY | 196 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele16g1930 | 196 | SMART | rrm1_1 | 69 | 140 | IPR000504 | GO:0003723 | |
Lele16g1930 | 196 | CDD | RRM_II_PABPs | 69 | 140 | - | - | |
Lele16g1930 | 196 | MobiDBLite | consensus disorder prediction | 52 | 67 | - | - | |
Lele16g1930 | 196 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 9 | 157 | - | - | |
Lele16g1930 | 196 | Coils | Coil | 8 | 45 | - | - | |
Lele16g1930 | 196 | MobiDBLite | consensus disorder prediction | 42 | 67 | - | - | |
Lele16g1930 | 196 | Gene3D | - | 1 | 149 | IPR012677 | - | |
Lele16g1930 | 196 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 68 | 144 | IPR000504 | GO:0003723 | |
Lele16g1930 | 196 | SUPERFAMILY | RNA-binding domain, RBD | 59 | 166 | IPR035979 | GO:0003676 | |
Lele16g1930 | 196 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Lele16g1930 | 196 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 70 | 138 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele16g1930 | Lele-ChrLele16 | 11667217 | 11671487 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele16g1930 | 69 | 139 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 31.944 | 9.30e-08 | 49.7 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele13g0583 | 13 | 18053617 | 18058717 | Lele16g1930 | 16 | 11667217 | 11671487 | hybridization | |
Lele14g0484 | 14 | 16499480 | 16501884 | Lele16g1930 | 16 | 11667217 | 11671487 | hybridization |