Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1930 ATGGAAAATGACGACGTCGACATGCAAAGCGCCGAGAACAATGAAGCAGAATTGGATGACATGAAGAAACGTTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAAATGCAGGCCAAGGTGGAGAAGGAGATGGGCTCCGTGCAAGATCCCGCTAATGCTGCTGCAAGTCAGGCCAATAGAGAGGAAACAGATTCTCGGTCAGTCTTTGTAGGCAATGTAGACTATTCATGTACTCCTGAAGAAGTGCAGCAGCATTTCCAATCGTGTGGAACAGTAAACAGAGTCACCATTCGTACTGACAAGTTTGGCCAACCCAAGGGTTATGCTTATGTGGAGTTCCTTGAGGTAGAGGCTGTTCAGGAGGCACTTCTGCTGAACGAAACTGAACTACATGGGCGTCAGTTGAAGGTAACAGCCAAGAGGACCAACATACCCGGGATGAAGCAGTATCATCCCCGTCGGCCCAATCCTTCTATGGGGTTTCGAGGCAGAACCCCATATGCACCTCCTTTTGCCTATTCTCCATATGGATATGGGAAGGTTCCAAGGTTCAGAATGCCAATGCGTTATAGCCCATACTATTGA 591 0.4822 MENDDVDMQSAENNEAELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPANAAASQANREETDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALLLNETELHGRQLKVTAKRTNIPGMKQYHPRRPNPSMGFRGRTPYAPPFAYSPYGYGKVPRFRMPMRYSPYY 196
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1930 196 SMART rrm1_1 69 140 IPR000504 GO:0003723
Lele16g1930 196 CDD RRM_II_PABPs 69 140 - -
Lele16g1930 196 MobiDBLite consensus disorder prediction 52 67 - -
Lele16g1930 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 9 157 - -
Lele16g1930 196 Coils Coil 8 45 - -
Lele16g1930 196 MobiDBLite consensus disorder prediction 42 67 - -
Lele16g1930 196 Gene3D - 1 149 IPR012677 -
Lele16g1930 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Lele16g1930 196 SUPERFAMILY RNA-binding domain, RBD 59 166 IPR035979 GO:0003676
Lele16g1930 196 MobiDBLite consensus disorder prediction 1 25 - -
Lele16g1930 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele16g1930 Lele-ChrLele16 11667217 11671487 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1930 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 9.30e-08 49.7
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0583 13 18053617 18058717 Lele16g1930 16 11667217 11671487 hybridization
Lele14g0484 14 16499480 16501884 Lele16g1930 16 11667217 11671487 hybridization