Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1925 ATGGCGTCTCTCAATTTCTCCTATTATTCTCCAGCATCTCTCTCGCGTCCTCGGGCATGCCAACATTTAAAATTGTTTAATGGGTTGCATTCTATTCATGGACTCGGATGTGATTTGGCACTTCTTCGATTAAATTCTAAATTCTTGCAAAGTGATAAGAGTGTTGGTAAAATCAAGGCAACTCTGATATCTGGAGGAGATGACCTTGTCTTAAACGCAAATGGAAATAATGTTGAGAAACAACCCGGAGCAATTGGACATGGAACACTTGCAGCTAATACAATGGCAACAAGCATTGGTTTTCCTGTTGACAGTGATGATAAAGATGAATTTGACATCCCCACAGAAGGTTTTGCTTCCATCCCTGAGGCTATTGAGGATATTCGCCAGGGAAAGATGGTATTGGTTGTAGATGATGAGGACAGGGAAAATGAAGGAGATTTGATAATGGCTGCACAGTTGGCAACACCTGAGGCTATGGCTTTTATTGTGAAGCATGGAACTGGGATAATTTGTGTAAGCATGAAAGAGGAAGATCTGGAGAGATTGGAACTTCCTTTGATGGTAGACAGTAAGGATAATGATGAGAAACTTCGTACTGCATTTACTGTGACAGTGGATGCTAAACGAGGTACCACCACAGGGGTATCAGCAGCTGATAGGGCAACAACAGTCTTGGCTCTTGCATCCAGAGATTCAAAACCGTATGATTTTAATCGCCCAGGCCATATATTTCCATTAAAATACAGGGAAGGTGGTGTCTTGAAAAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGCCATACTTGCAGGATTGGAACCTGTGGCAGTTCTATGTGAAGTTGTAGATGATGATGGTTCCATGGCTAGACTGCCAAAGCTTCGCCAGTTTGCAGAGCGTGAATACTTGAAAATAATTTCTATTGCTGACTTAATAAGATATAGAAGGAAGAGAGATAAATTAGTAGTTCTTGCTGGTGCTGCGCAAATACCTACAATGTGGGGGCCATTCACAGCTTACTGTTACAGGTCAATTTTAGACGGGATGGAACATATTGCAATGGTTAAGGGTGACATTGGGGATGGAAAAGATGTTCTCGTGAGGGTGCACTCTGAGTGTCTCACTGGAGATATATTTGGATCTGCCAGATGCGACTGTGGGAATCAGCGAGGGCTCGCGATGCAGCAGATTGAGGCTGTTGGTAGGGGTGTCCTGATATATCTCCGAGGACACGAAGGAAGAGGTATTGGGCTTGGCCACAAGCTTCGTGCATATGACTTGCAGGATGATGGACGAGATACTGTTGAAGCCAATGAGGAGTTGGGTTTGCCTGTTGACTCGAGGGAATATGGTATTGGTGCACAGATGTTGAGGGATTTGGGTGTTCGATCGATGAAGCTGATGACGAACAATCCGGCAAAATACGTGGGGCTCAAAGGTTATGGTTTGACAATTTCTGGTCGGATCCCATTAGTAACCCTGATCACAAAGGAAAACCGGAGGTATTTGGAGACAAAACGTGCCAAAATGGGACACATTTATGGTTTGGAATTCAACGACCAGTTGAGCAGTTACGCCACAGGCAATGGTAAAGTCAACGCCGATGATTCTAATAATGTTGTTCCTGGCTCATGA 1638 0.4389 MASLNFSYYSPASLSRPRACQHLKLFNGLHSIHGLGCDLALLRLNSKFLQSDKSVGKIKATLISGGDDLVLNANGNNVEKQPGAIGHGTLAANTMATSIGFPVDSDDKDEFDIPTEGFASIPEAIEDIRQGKMVLVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIICVSMKEEDLERLELPLMVDSKDNDEKLRTAFTVTVDAKRGTTTGVSAADRATTVLALASRDSKPYDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAILAGLEPVAVLCEVVDDDGSMARLPKLRQFAEREYLKIISIADLIRYRRKRDKLVVLAGAAQIPTMWGPFTAYCYRSILDGMEHIAMVKGDIGDGKDVLVRVHSECLTGDIFGSARCDCGNQRGLAMQQIEAVGRGVLIYLRGHEGRGIGLGHKLRAYDLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRSMKLMTNNPAKYVGLKGYGLTISGRIPLVTLITKENRRYLETKRAKMGHIYGLEFNDQLSSYATGNGKVNADDSNNVVPGS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1925 545 CDD GTP_cyclohydro2 322 514 IPR000926 GO:0003935|GO:0009231
Lele16g1925 545 Pfam GTP cyclohydrolase II 328 491 IPR032677 -
Lele16g1925 545 Gene3D GTP cyclohydrolase II 324 494 IPR036144 -
Lele16g1925 545 Gene3D DHBP synthase 106 323 - -
Lele16g1925 545 PANTHER GTP CYCLOHYDROLASE II-RELATED 116 516 - -
Lele16g1925 545 SUPERFAMILY RibA-like 322 492 IPR036144 -
Lele16g1925 545 TIGRFAM ribA: GTP cyclohydrolase II 329 514 IPR000926 GO:0003935|GO:0009231
Lele16g1925 545 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 117 513 IPR016299 GO:0009231
Lele16g1925 545 SUPERFAMILY YrdC/RibB 117 319 IPR017945 -
Lele16g1925 545 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 109 322 - -
Lele16g1925 545 Hamap GTP cyclohydrolase-2 [ribA]. 321 517 IPR000926 GO:0003935|GO:0009231
Lele16g1925 545 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 116 320 IPR000422 GO:0008686|GO:0009231
Lele16g1925 545 FunFam Riboflavin biosynthesis protein RibBA 323 494 - -
Lele16g1925 545 TIGRFAM ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 119 316 IPR000422 GO:0008686|GO:0009231
Lele16g1925 545 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 123 315 IPR000422 GO:0008686|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1925 Lele-ChrLele16 11614008 11618962 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0600 13 18198190 18200563 Lele16g1925 16 11614008 11618962 CCT
Lele16g1925 16 11614008 11618962 Lele16g1925 16 11614008 11618962 ECH
Lele13g0590 13 18118953 18124281 Lele16g1925 16 11614008 11618962 hybridization
Lele14g0490 14 16575471 16580437 Lele16g1925 16 11614008 11618962 hybridization