Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1909 ATGGGAAGCAGCTTTCTCGCTCCACCAGTGAAGAAGCGTTCGACACCGTACACTGAAACTGGTTCGGCCGACCCGAACCTGTATGCATCCAATGGGTCAACCAAGCGCTCCAAGTCCAAGCACCCACCTCCTCCACTCAGTATCCCCCCAGGTCATATCGCTTTCCGATTGCTCTGCCAAGCTTCCCGAATTGGCGGCATAATTGGCAAGTCCGGCTCCGTCATACAGAACCTCCAGCAAGTTACGGGGGCCAAGATCCGCGTCGAAGATGCCCCATCTGAATCACCGGACAGGGTCATTGTTGTGATTGCGCCGAGTGCTCTCAGCAGCAAGGTTTTTCTGAAACCCCAGAGTCAGAGTTCGGATTCGGAACCGTCTGAGGAAGATGACGATAATGGAGATGACGAGGGCGAAGGTGAAGCTGTTGAGGTCTCAAAAGCTCAGGAAGCACTGTTGAAGGTGTTCGAGAGGATTCTGGATGTTGCAGCGGAGACTGAGGGCATTAGAGTGGAGAATGGATTAGTGTCCTGTAGGCTGCTGGCGGATGCGGCACAGGTTGGGGCAGTCATTGGGAAGGGAGGGAAGGTGGTGGAGAAGATTAGGAAGGACAGTGGATGTAAAATTAAAGTTTTGGCAGACAAGTTGCCTCCTTGCACTGCCCCGTCCGACGTAATGATTGATATAGAAGGCCATGTGCAGTCTGTAAAGAAGGCACTTCTTGCTGTTTCTCGCCGTCTTCAAGATTTCCCTCCACCCAGCAAGACAAAGATGATGGCAAGCAAGCCTCATGAAGTGGTTCAACATGAAAGCTTAGTCGCAGTTCCACATGATACTTTAACTGTAGTTCCACGTGAGACTTTTCCTAATCTGCATGCAGACCATCTTCTGCAGAGAGGCTCTGTGGTATCTACTATACCCAGCAGCTATGCTTCAGGAGTTCATTCAGTGTCAGCTGAGGTAAACAGAGTCTCTAACCTGGATCCAACAACACTTAAGCAGGAAGTTTCCTTTAGAATTCTTTGCCCCAATGATAGGGTTGGTGGTATAATTGGTAAAGGTGGCAGTATTGTCAGAGCCCTTCAGAATGAGACTGGGGCTACTATAAGTATTGGTCCTTCAATGGAAGAATGTGAGGACAGGTTGATTAGTGTTACTTCTTCTGAGAATCTTGAATCAAGATATTCCCCAGCGCAGAAGGCTGTTGTCCTTCTTTTCTCCAGGTCTGTAGAAGCAGGCATTGAGAAGGGGCTGGACTCAGGATCAAATGGGTCATCTGTTACTGCAAGACTCGTGGTCTCATCAAACCAAGTTGGTTGCTTATTGGGAAAAGGAGGATCAATAATCACTGAAATGCGGAAGGCAACTGGTGCTAGCATAAAAATAATGGGGACTGACTGGGCTCCAAAGTGTGCATCACAGAACGATCAATTAGTTCAGATATCTGGATCGTTTTCGAATGTTCAAGATGCGTTGTATAATGCAACTGGCAGATTGCGAGATAATCTTTTTAACAGCACACAGAACAGTGTTGGAACAAAAACCATTACCTCTGTGTTACCTGATACCAGTCCTCGTGGGAGATTGAGGGATCCGGTTCCTATTGGTGTCCAACCGGTCATTGGTGTTTCTCATAGTCTGAGTAGACATACTATGTCACAAAACATAGATCAAGTTGTTTCTCGCTATTTAGATCACCCCTCTTCACCAGGGTCATGGGCACCACGGATGGTTTCTGGGATAAACTCGAGAGGCGTAAATGATGTTGGCAGGGGATTGACTTCTCTAAAAGGTGGCTTAGAACTTGGCAGCGGAAGCAAAATTGCCATGGTGACTAATACAACTGTGGAAATTGTTGTTCCTGATGATGTCATTGGCTCGGTATATGGGGAAAATGGTAGCAATTTGGCTCGTCTGAGAAAGATTTCAGGTGCCAAGGTTATTGTCCATGGACCTCGTCCAGGAACAAGAGACAGGACCGTTGTCATATCTGGTACGCCTGATGAAACCCAAGCCGCTCAGAGCCTTCTTCAAGCATTTATCCTCACAGGTTCTTCATGA 2058 0.4772 MGSSFLAPPVKKRSTPYTETGSADPNLYASNGSTKRSKSKHPPPPLSIPPGHIAFRLLCQASRIGGIIGKSGSVIQNLQQVTGAKIRVEDAPSESPDRVIVVIAPSALSSKVFLKPQSQSSDSEPSEEDDDNGDDEGEGEAVEVSKAQEALLKVFERILDVAAETEGIRVENGLVSCRLLADAAQVGAVIGKGGKVVEKIRKDSGCKIKVLADKLPPCTAPSDVMIDIEGHVQSVKKALLAVSRRLQDFPPPSKTKMMASKPHEVVQHESLVAVPHDTLTVVPRETFPNLHADHLLQRGSVVSTIPSSYASGVHSVSAEVNRVSNLDPTTLKQEVSFRILCPNDRVGGIIGKGGSIVRALQNETGATISIGPSMEECEDRLISVTSSENLESRYSPAQKAVVLLFSRSVEAGIEKGLDSGSNGSSVTARLVVSSNQVGCLLGKGGSIITEMRKATGASIKIMGTDWAPKCASQNDQLVQISGSFSNVQDALYNATGRLRDNLFNSTQNSVGTKTITSVLPDTSPRGRLRDPVPIGVQPVIGVSHSLSRHTMSQNIDQVVSRYLDHPSSPGSWAPRMVSGINSRGVNDVGRGLTSLKGGLELGSGSKIAMVTNTTVEIVVPDDVIGSVYGENGSNLARLRKISGAKVIVHGPRPGTRDRTVVISGTPDETQAAQSLLQAFILTGSS 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1909 685 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 42 504 - -
Lele16g1909 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 330 387 IPR036612 GO:0003723
Lele16g1909 685 MobiDBLite consensus disorder prediction 123 138 - -
Lele16g1909 685 ProSiteProfiles Type-1 KH domain profile. 334 401 - -
Lele16g1909 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 612 680 IPR036612 GO:0003723
Lele16g1909 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 421 501 IPR036612 GO:0003723
Lele16g1909 685 CDD PCBP_like_KH 427 492 - -
Lele16g1909 685 MobiDBLite consensus disorder prediction 113 142 - -
Lele16g1909 685 CDD PCBP_like_KH 176 243 - -
Lele16g1909 685 MobiDBLite consensus disorder prediction 15 40 - -
Lele16g1909 685 Gene3D K Homology domain, type 1 610 681 IPR036612 GO:0003723
Lele16g1909 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 172 250 IPR036612 GO:0003723
Lele16g1909 685 Pfam KH domain 614 677 IPR004088 GO:0003723
Lele16g1909 685 Pfam KH domain 56 104 IPR004088 GO:0003723
Lele16g1909 685 Pfam KH domain 427 491 IPR004088 GO:0003723
Lele16g1909 685 Pfam KH domain 337 389 IPR004088 GO:0003723
Lele16g1909 685 Pfam KH domain 177 241 IPR004088 GO:0003723
Lele16g1909 685 CDD KH-I 614 677 - -
Lele16g1909 685 Gene3D - 333 501 - -
Lele16g1909 685 Gene3D - 115 250 - -
Lele16g1909 685 ProSiteProfiles Type-1 KH domain profile. 174 242 - -
Lele16g1909 685 ProSiteProfiles Type-1 KH domain profile. 52 102 - -
Lele16g1909 685 MobiDBLite consensus disorder prediction 1 48 - -
Lele16g1909 685 SMART kh_6 611 681 IPR004087 GO:0003676
Lele16g1909 685 SMART kh_6 51 163 IPR004087 GO:0003676
Lele16g1909 685 SMART kh_6 173 247 IPR004087 GO:0003676
Lele16g1909 685 SMART kh_6 424 499 IPR004087 GO:0003676
Lele16g1909 685 SMART kh_6 333 406 IPR004087 GO:0003676
Lele16g1909 685 Gene3D K Homology domain, type 1 53 112 IPR036612 GO:0003723
Lele16g1909 685 ProSiteProfiles Type-1 KH domain profile. 612 676 - -
Lele16g1909 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 43 105 IPR036612 GO:0003723
Lele16g1909 685 CDD PCBP_like_KH 55 105 - -
Lele16g1909 685 ProSiteProfiles Type-1 KH domain profile. 425 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1909 Lele-ChrLele16 11510398 11516930 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0603 13 18211324 18213658 Lele16g1909 16 11510398 11516930 CCT
Lele15g1880 15 11568083 11570541 Lele16g1909 16 11510398 11516930 CCT
Lele16g1909 16 11510398 11516930 Lele13g0608 13 18236101 18243271 CCT
Lele16g1909 16 11510398 11516930 Lele14g0505 14 16685274 16695851 CCT
Lele16g1909 16 11510398 11516930 Lele15g1875 15 11534931 11542975 CCT
Lele16g1909 16 11510398 11516930 Lele16g1906 16 11491901 11502057 CCT
Lele13g0605 13 18220582 18225758 Lele16g1909 16 11510398 11516930 hybridization
Lele14g0503 14 16667227 16673861 Lele16g1909 16 11510398 11516930 hybridization