Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1906 ATGGCCGAAGACTCAATACCGCCTCCATCATCGTCTTCCTCCTCTGCTCCTCTCGGCTCCTCCGTGATCTCTATAGTGAACAAGCTCCAAGACATCTTCGCTCGGGTGGGGAGCCAGTCCACCATCGATCTTCCCCAAGTCGCCGTCGTTGGCAGCCAGAGTAGTGGCAAGTCCAGTGTCCTCGAGGCCCTTGTCGGCCGCGACTTCTTGCCTAGGGGTAATGATATTTGCACTAGGAGGCCCCTGGTGCTGCAGCTCGTGCAGACTAAGAAGAAGCCCGATGGCACTGAAGAGGAGTACGGGGAGTTCCTTCACTTGCCTGGCAAGAGGTTCTACGATTTCTCTGAGATTCGAAGGGAGATTCAGGCTGAAACTGACAGGGAAGCTGGAGGAAATAAAGGTGTATCGGACAAACAGATACGTCTCAAGATTTTTTCACCAAATGTTCTTGATATTACACTTGTAGATCTACCTGGGATTACAAAGGTTCCTGTTGGAGACCAGCCTTCTGATATTGAAGCTCGAATCAGAACAATGATTATGTCGTACATTAAAACTCCCACCTGTCTCATTCTCGCTGTCACCCCAGCTAATTCAGATTTGGCCAACTCAGATGCTCTTCAAATGGCAGGAGTTGCTGATCCTGATGGCAACAGAACAATAGGAGTAATCACAAAGTTGGATATCATGGACAGAGGCACGGATGCCCGCAATCTGTTACTTGGGAAAGTCATTCCCCTCCGACTTGGTTATGTGGGGGTTGTTAATCGTAGTCAGGAGGATATCCTAATGAACCGAAGTATAAAAGATGCTCTTATTGCTGAAGAGAAATTCTTTCGCAGTCGTCCAATATACAGTGGTCTAGCAGAGAGCTGCGGTGTTCCTCAATTGGCAAAGAAATTAAATCAGATTCTAGCCCAGCATATAAAGGCCGTTCTCCCAGGGCTGAGAGCTCGTATAAGCTCTCAACTGGTTACTGTTGCAAAGGAGCATGCAAGCTATGGGGAAATCACGGAGTCCAAGGCTGGTCAGGGTGCCCTTCTCCTAAATATTCTTTCAAAATATTCTGAAGCATTTTCCTCCATGGTAGAGGGAAAGAATGAGGAGATGTCGACAACTGAATTATCTGGTGGAGCCAGAATTCATTATATTTTTCAGTCTATATTTGTGAAGAGTTTAGAGGAGGTGGATCCATGTGAGGACTTAACTGATGATGATATTCGAACCGCTATACAGAATGCAACTGGGCCTAGATCAGCATTATTTGTTCCAGAAGTACCATTTGAAGTCCTTTTGAGAAGGCAAATAGCTCGTCTATTAGATCCAAGCCTTCAGTGTTCGAGGTTTATATATGATGAGTTGATGAAGATTAGCCATCGCTGTATGGTCACTGAACTGCAGCGGTTCCCATTTTTGAGAAAGCGCATGGATGAAGTGATAGGGAACTTTCTACGAGAAGGTCTTGAACCCTCAGAGAATATGATTGGACACATTATAGAAATGGAGATGGACTACATAAACACTTCCCACCCAAATTTTATTGGTGGAAGCAAGGCATTGGAGGCTGCTGTGCAACAGACCAAGTCTTCCAGGGTTCCCCTGCAAATGCCCAGGTCAAAGGATGGTATGGAGTCTGAGAAGGGATCAGCCTCTGAAAGAAGTATGAAGTCTCGGGGACTTATTGCAAGGCAAGTAAATGGAGTAGTTGCGGCTGATCAGGTTGGTCGTGCTGCATCAGAAGGTGAAAAAGTTGCAGCCTCTGGAAATACCAGTGCAACAAGCTGGGGTATCTCGTCTATTTTTGGTGGAGGTGATAGCCGTGTGTCTATAAAGGAGATCACATCAAGTAAACCGCACAATGAACCAGTTAACACTCATAGCATGGAACAATCGTTATCTATGATCCATCTGAGAGAGCCACCTGCTGTCTTGAAGCCATCTGAGAGCAATTCAGAGACAGAAGCTGTTGAAATTGCGGTGACAAAGTTGCTTTTGAAATCATACTATGACATTGTCAGAAAAAATGTTGAGGATTTGGTCCCCAAAGCAATTATGCACTTCTTGGTAAACAACACGAAGAGAGAGCTTCACAATGTTTTCATCAAAAAGCTTTACAGAGAAAACCTGTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCAATGAAAAGAAAACGTTGTCGAGAATTGCTCCGAGCTTATCAACAGGCGTTCCGGGACTTGGATGAACTGCCACTGGAAGCAGAAACAGTTGAAAGAGGATATAGCCTGCCTGAATCAACTGGCTTGCCTAAAATTCATGGGTTGCCATCTTCATCTCTGTATTCTGCAAGCAGTTCTGGAGACTACTATGGAGCTTCCCCAAAGAACCCAAAGTCTAGAAAATCTTCACATTCTGGGGAGTTTCAATCACCATCACATGCCTTTTCAGATTCCAATGGAAGTGGAGGGCCTTTCACTTCAGGTTTCTATCCCACAGTCCACGATTGA 2490 0.4542 MAEDSIPPPSSSSSSAPLGSSVISIVNKLQDIFARVGSQSTIDLPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLVQTKKKPDGTEEEYGEFLHLPGKRFYDFSEIRREIQAETDREAGGNKGVSDKQIRLKIFSPNVLDITLVDLPGITKVPVGDQPSDIEARIRTMIMSYIKTPTCLILAVTPANSDLANSDALQMAGVADPDGNRTIGVITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDILMNRSIKDALIAEEKFFRSRPIYSGLAESCGVPQLAKKLNQILAQHIKAVLPGLRARISSQLVTVAKEHASYGEITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTTELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPRSALFVPEVPFEVLLRRQIARLLDPSLQCSRFIYDELMKISHRCMVTELQRFPFLRKRMDEVIGNFLREGLEPSENMIGHIIEMEMDYINTSHPNFIGGSKALEAAVQQTKSSRVPLQMPRSKDGMESEKGSASERSMKSRGLIARQVNGVVAADQVGRAASEGEKVAASGNTSATSWGISSIFGGGDSRVSIKEITSSKPHNEPVNTHSMEQSLSMIHLREPPAVLKPSESNSETEAVEIAVTKLLLKSYYDIVRKNVEDLVPKAIMHFLVNNTKRELHNVFIKKLYRENLFEEMLQEPDEVAMKRKRCRELLRAYQQAFRDLDELPLEAETVERGYSLPESTGLPKIHGLPSSSLYSASSSGDYYGASPKNPKSRKSSHSGEFQSPSHAFSDSNGSGGPFTSGFYPTVHD 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1906 829 ProSiteProfiles GED domain profile. 658 749 IPR020850 -
Lele16g1906 829 SMART GED_2 653 744 IPR003130 GO:0003924|GO:0005525
Lele16g1906 829 Pfam Dynamin central region 235 521 IPR000375 -
Lele16g1906 829 FunFam dynamin-related protein 3A 20 323 - -
Lele16g1906 829 PRINTS Dynamin signature 215 231 IPR022812 -
Lele16g1906 829 PRINTS Dynamin signature 146 163 IPR022812 -
Lele16g1906 829 PRINTS Dynamin signature 69 86 IPR022812 -
Lele16g1906 829 PRINTS Dynamin signature 238 257 IPR022812 -
Lele16g1906 829 PRINTS Dynamin signature 44 62 IPR022812 -
Lele16g1906 829 PRINTS Dynamin signature 196 214 IPR022812 -
Lele16g1906 829 CDD DLP_1 42 314 IPR001401 GO:0003924|GO:0005525
Lele16g1906 829 Gene3D Dynamin, middle domain 619 724 - -
Lele16g1906 829 Gene3D Dynamin, middle domain 344 545 - -
Lele16g1906 829 SMART dynamin_3 19 266 IPR001401 GO:0003924|GO:0005525
Lele16g1906 829 Pfam Dynamin family 47 226 IPR045063 -
Lele16g1906 829 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 41 314 IPR030381 GO:0005525
Lele16g1906 829 FunFam Dynamin-related protein 3A 345 555 - -
Lele16g1906 829 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 70 79 IPR019762 -
Lele16g1906 829 Gene3D - 20 324 IPR027417 -
Lele16g1906 829 FunFam Dynamin-related protein 3A 604 724 - -
Lele16g1906 829 MobiDBLite consensus disorder prediction 780 820 - -
Lele16g1906 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 322 IPR027417 -
Lele16g1906 829 MobiDBLite consensus disorder prediction 526 556 - -
Lele16g1906 829 Pfam Dynamin GTPase effector domain 654 743 IPR003130 GO:0003924|GO:0005525
Lele16g1906 829 PANTHER DYNAMIN 21 743 IPR022812 -
Lele16g1906 829 MobiDBLite consensus disorder prediction 780 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1906 Lele-ChrLele16 11491901 11502057 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1909 16 11510398 11516930 Lele16g1906 16 11491901 11502057 CCT
Lele13g0606 13 18227245 18230488 Lele16g1906 16 11491901 11502057 CCT
Lele14g0504 14 16676205 16679776 Lele16g1906 16 11491901 11502057 CCT
Lele15g1877 15 11551364 11554537 Lele16g1906 16 11491901 11502057 CCT
Lele16g1897 16 11420719 11433316 Lele16g1906 16 11491901 11502057 CCT
Lele13g0608 13 18236101 18243271 Lele16g1906 16 11491901 11502057 hybridization
Lele14g0505 14 16685274 16695851 Lele16g1906 16 11491901 11502057 hybridization