Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele16g1904 | ATGGAGGGGAAAAGGTATGCTGTGTTGCTGTGCGCGGAGGATTCCGATTACGTGAGGAAGAAGTACGGAGGCTATTTTGGGGTCTTCATCGGAATGCTGGCGGAGGAAGACGAGACCTGGGACGTTTACAAGGTGTCGTCCGGCGAGTTCCCGGAGGACGACGGCAATCTCGATGTTTACGACGGATTCGTCATCACCGGCAGCTGCAATGACGCCCACGGAAATGACGCCTGGATCCATCGCCTCATCACTCTCATTCAGAAACTCGATTCCATGAAGAAGAAAATCCTCGGCATTTGCTTCGGTCATCAGATACTGTGTCGTGCATTGGGAGGGAAGGTGAGTCGATCTCCAACTGGTTGGGACATTGGAGTGAGAACCATAACGTTAGCATCATCATCTCTGATGCTGCCGTCAAAGCTGTCGGTAATCGAATGTCATCGCGATGAGGTGAGAGAACTTCCGGCGAAGGCCGAGGTAATCGGGTGGTCGGAGAAGACAGGGATCGAGATGTTTAAGCTTGAGGATCACATCATGGGGATCCAAGGCCACCCTGAGTACACCGTTGACATCCTTTTGCACCTCATTGACCGCCTCCTTCAACGTCACCTCATAACGGAAACTTACGAAGTGGAAGCAAGGGCTAAGGTGGGGTTGCCAGAGGTAGATAGAGAGGCTTGGAAGAAACTCTGCACTAACTTCCTCAAAACTCGCTTCTGA | 720 | 0.5194 | MEGKRYAVLLCAEDSDYVRKKYGGYFGVFIGMLAEEDETWDVYKVSSGEFPEDDGNLDVYDGFVITGSCNDAHGNDAWIHRLITLIQKLDSMKKKILGICFGHQILCRALGGKVSRSPTGWDIGVRTITLASSSLMLPSKLSVIECHRDEVRELPAKAEVIGWSEKTGIEMFKLEDHIMGIQGHPEYTVDILLHLIDRLLQRHLITETYEVEARAKVGLPEVDREAWKKLCTNFLKTRF | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele16g1904 | 239 | CDD | GATase1_1 | 5 | 186 | IPR044992 | - | |
| Lele16g1904 | 239 | ProSiteProfiles | Glutamine amidotransferase type 1 domain profile. | 5 | 209 | - | - | |
| Lele16g1904 | 239 | PANTHER | GLUTAMINE AMIDOTRANSFERASE YLR126C-RELATED | 4 | 237 | IPR044992 | - | |
| Lele16g1904 | 239 | Gene3D | - | 16 | 237 | IPR029062 | - | |
| Lele16g1904 | 239 | SUPERFAMILY | Class I glutamine amidotransferase-like | 51 | 236 | IPR029062 | - | |
| Lele16g1904 | 239 | FunFam | Gamma-glutamyl peptidase 5 | 17 | 236 | - | - | |
| Lele16g1904 | 239 | Pfam | Glutamine amidotransferase class-I | 43 | 188 | IPR017926 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele16g1904 | Lele-ChrLele16 | 11480703 | 11483657 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele13g0608 | 13 | 18236101 | 18243271 | Lele16g1904 | 16 | 11480703 | 11483657 | CCT | |
| Lele14g0505 | 14 | 16685274 | 16695851 | Lele16g1904 | 16 | 11480703 | 11483657 | CCT | |
| Lele15g1875 | 15 | 11534931 | 11542975 | Lele16g1904 | 16 | 11480703 | 11483657 | CCT | |
| Lele16g1904 | 16 | 11480703 | 11483657 | Lele14g0508 | 14 | 16714217 | 16715683 | CCT | |
| Lele16g1904 | 16 | 11480703 | 11483657 | Lele16g1902 | 16 | 11473096 | 11474571 | CCT | |
| Lele13g0613 | 13 | 18273072 | 18282872 | Lele16g1904 | 16 | 11480703 | 11483657 | CCT | |
| Lele14g0513 | 14 | 16768291 | 16779336 | Lele16g1904 | 16 | 11480703 | 11483657 | CCT | |
| Lele14g0507 | 14 | 16705571 | 16710812 | Lele16g1904 | 16 | 11480703 | 11483657 | hybridization |