Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1901 ATGGCTTCTTTCTGGTTCCTCACTCTCCTTCTTAAATGCGTCGACTTTCTTTCATGGCCCGTGCTTGCTTTGGGTTATCCTCTATGTATTTCCATCGAAGCAATTGAGAATGATAACCATTCAGACATTCGGAATTTGATCTCTTATTGGATTCTTCTCTCACTGATGTACCTCTTCGAGTACGCTTTTCTCGGGCTTCTTCAATGGTTTCAGTATTGGCATTACACGAAGCTGATGATCGTCGCCTTCCTTGTGATGCCGGACTTTGGGAGAGCTTCTTATGTCTATAATCACCTCATTCGATCATGCATCTACATGAATCCACAAGCAGTCATAAGCAGATTCAGGAACTGGAACAAGATATTTGTCAAGAAAGAAGACTTTATAATGCAGGCTGAGAAGTACATAACACAGAATGGAACTGAAGCCTTAGAAAAACTCATTGCTAGCAAGTGTAGTTTGGAATGTTGTCTTCTTATGGCTCTTATTATTTTGGATGACTTGGAGCATATCAGATATGGATATACACTCGAAATTCGAGATGCTCGGGTCGAAATGATCATATCAAATACAAATAGAGGAAGTCTTCTTATGGAACAGAAAGACATCAGAGATTTGGAGATGATTGAAGACGAGCAACTTCCTGAAGGCAAACAAGTTGAGCAACTTCCTGAAGGCAAACAAGTTGATACAGCCTTGTGCAGCCTAAAATCAAATGAAAGCACTTCATCTGCCATGGCGAAAACCGAAGAAATGGCGGTAGACACAGAAGGCGGAACATATCCCCAGGTTTCAGCATCTGAGAATGTACAGAAAGAGTGGACTTGTGCCATATGCCAATTGACAATGCCTTCTGAAGCTAATTTGAATTCCCACCTGCAAGGAAGAAGACACAAGGCCTTTTGCGAAGCACTGAACACGAAACCTAAAGCGAAGACGGCGAAAGAAACAGGAGGCGGAGCATCTTCTCTGGTTTCTGGATCTAAAAATGAACAAGAGACAAAGTGGACTTGTGGGATATGCCAGCGGACATTTCCTTCTGAGGCTAATTTGAAGTCCCACATGTATGGAAAGAAGCATAAGGCGAAAAGCCAGCGTCTTGCTGAGATAGTTTTAGAACAAGAGCAGACAATAAATACTTCAAATGCATTACCACAGAAGAACAGTTGCAGAATAAGATGCGAGATGTGTAATAAAACAGAGCAGAACCTTGATGCGGAAAAGAAAAAGGCAGTTCCAACTACAGAGAAGAATGAAATGCATCTGAACACAGCACAAAATCTTGATACAGAAACAAGAAAAATAGTTCCTACCATAGAGAAGAATGAAGGCCAGCAGACAAATAAAGTAAGGCTTCCCTTGGAACAGAAAGACATAAGAAATTTGAAGATGATTGAAAAAGAGGAAGTCCCCAATGGCAAGCCAGCTAATACAGCGTTGTGCAGCCTCAAATCAAACGAGAACACCTTATCTAACATAGCAAAAACTGAAGGAATGGCGGCAAAATGCACAGAAGGTGGAGCATTTCCTCATATTTCTGCATCTAAGAGTTTTCAGAAAGAGAGGACTTTTGCCATATGCCAGATGACTACAACTTCTGAGGCTGATTTGAGTTTTCACTTGCATGGGAGGTTTCATAAGGCTGCCTGCGAAGCACAGAAAGCGAAAAACGGGTCTGTTGCTTTGGAAGTTTTCGTGAAGAAGAATGACAAGTCATGTGGAGGAACCAGAGAAGATGATCGATACTTTGAATTCATTAGAAATCACCTGCCAAAGAGGACTATAGAGCAGGAAAACATGAGCACAAGTGTTCAAGGCATTCCCAAGGTGCAGGAATTGCAGAAGAACTCTGGAAAATCAGTGCTTGAAATGAACAACTCCAGATTCAGATGCGATATGTGTGATGTAATTGCAGTAGTGAAGTAG 1926 0.4159 MASFWFLTLLLKCVDFLSWPVLALGYPLCISIEAIENDNHSDIRNLISYWILLSLMYLFEYAFLGLLQWFQYWHYTKLMIVAFLVMPDFGRASYVYNHLIRSCIYMNPQAVISRFRNWNKIFVKKEDFIMQAEKYITQNGTEALEKLIASKCSLECCLLMALIILDDLEHIRYGYTLEIRDARVEMIISNTNRGSLLMEQKDIRDLEMIEDEQLPEGKQVEQLPEGKQVDTALCSLKSNESTSSAMAKTEEMAVDTEGGTYPQVSASENVQKEWTCAICQLTMPSEANLNSHLQGRRHKAFCEALNTKPKAKTAKETGGGASSLVSGSKNEQETKWTCGICQRTFPSEANLKSHMYGKKHKAKSQRLAEIVLEQEQTINTSNALPQKNSCRIRCEMCNKTEQNLDAEKKKAVPTTEKNEMHLNTAQNLDTETRKIVPTIEKNEGQQTNKVRLPLEQKDIRNLKMIEKEEVPNGKPANTALCSLKSNENTLSNIAKTEGMAAKCTEGGAFPHISASKSFQKERTFAICQMTTTSEADLSFHLHGRFHKAACEAQKAKNGSVALEVFVKKNDKSCGGTREDDRYFEFIRNHLPKRTIEQENMSTSVQGIPKVQELQKNSGKSVLEMNNSRFRCDMCDVIAVVK 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1901 641 ProSitePatterns Zinc finger C2H2 type domain signature. 276 298 IPR013087 -
Lele16g1901 641 PANTHER OS06G0651300 PROTEIN-RELATED 233 316 - -
Lele16g1901 641 ProSitePatterns Zinc finger C2H2 type domain signature. 338 360 IPR013087 -
Lele16g1901 641 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Lele16g1901 641 SMART ZnF_U1_5 520 553 IPR003604 GO:0003676|GO:0008270
Lele16g1901 641 SMART ZnF_U1_5 271 305 IPR003604 GO:0003676|GO:0008270
Lele16g1901 641 SMART ZnF_U1_5 333 367 IPR003604 GO:0003676|GO:0008270
Lele16g1901 641 SUPERFAMILY beta-beta-alpha zinc fingers 318 367 IPR036236 -
Lele16g1901 641 SMART c2h2final6 336 360 IPR013087 -
Lele16g1901 641 SMART c2h2final6 274 298 IPR013087 -
Lele16g1901 641 Pfam Zinc-finger of C2H2 type 336 360 - -
Lele16g1901 641 Pfam Zinc-finger of C2H2 type 526 546 - -
Lele16g1901 641 Pfam Zinc-finger of C2H2 type 274 298 - -
Lele16g1901 641 Gene3D Classic Zinc Finger 325 370 - -
Lele16g1901 641 ProSiteProfiles Zinc finger C2H2 type domain profile. 336 365 IPR013087 -
Lele16g1901 641 Gene3D Classic Zinc Finger 254 303 - -
Lele16g1901 641 SUPERFAMILY beta-beta-alpha zinc fingers 266 309 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1901 Lele-ChrLele16 11462767 11468632 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele16g1901 TB2_DP1_HVA22 1.5e-15 No_clan