Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1900 ATGGCTTCTTTCTGGTTCCTCACTCTCCTTCTTAAATGCGTCGACTTTCTTTCATGGCCCGTGCTTGCTTTGGGTTATCCTCTACACTCGGAATTTGATCTCTTATTGGATTCTTCTCTCACTGATATACCTCTTCGAGTATCCTTTTCTCGGGCTTCTTCAATGGTTCTGCAGCAATTTTCTTACTTTTCCATCCTCATCATCATCTTCTACATCAGGTTTCAGTATTGGCATTACACGAAGCTAATGATCGTCGCCTTCCTTGTGATGCCGGACTTTGGGAGAGCTTCTTATGTCTATGATCACCTCATTCGATCATGCATCTACATGAATCCACAAGCAGTCATAAGCAGATTCAGGAACTGGAACAAGATATTTGTCAAGAAAGAAGACTTTATAATGCAGGCTGAGAAGTACATAACACAGAATGGAACTGAAGCCTTAGAAAAACTCATTGCTAGCAAGACAAATAGAGGAAGGCTTCTCATGGGACAGAACGACATCAGAGATTTGGAGATGATTGAAAACGAGCAACTTCCTGAAGGCAAACAAGTAAGATTTCATATCATCTTCAAGTTAAGAAAAAAACGAAAGAAAGAAAGAAAGAAAAGCTTTTCCCCGATACTAAGTCATGCTGGAGTTGATACAGCCTTGTGCAGCCTAAAATCAAATGAAAGCACTTCATCTGCCATGGCGAAAACCGAAGAAATGGAGGTAGACACAGAAGGCGGAACATATCCTCAGGTTTCAGCATCTGAGAATGTACAGAAAGAGTGGACTTGTGCCATATGCCAATTGACAATGCCTTCTGAAGCTAATTTGAATTCCCACCTGCAAGGAAGAAGACACAAGGCCGCTTGCGAAGCACTGAACACGAAAACTAAAGCGAAGACGGCGAAAGACACAGGAGGCGGAGGATCTCCTCAGGTTTCTGGATCTACAAATGAACAAGAGACAAAGTGGACTTGTGGGATATGCCAGTGGACATTTCCTTCTGAGGCTAAATTGAAGTCCCACATGTATGGAAAGAAGCATAAGGCTGCTTGCGAAGCTCTGGAGGCGAAAATCCAGCTTCTTGCTGAGATAGTTTTAGAACAAGAGCAGACAATAAATACTTCAAATGCATTACCACAGAACAACAGTTGCAGATTAAGATGCGAGATGTGTAATGTAAATTGCTCTAGTGAAAGTGTCTTCGCTTCTCACTTGCAGGGTAAGAAGCACTTGGCTCAGAGTCAATTACTAAGTGGTGCTTGGGAGTAA 1263 0.4236 MASFWFLTLLLKCVDFLSWPVLALGYPLHSEFDLLLDSSLTDIPLRVSFSRASSMVLQQFSYFSILIIIFYIRFQYWHYTKLMIVAFLVMPDFGRASYVYDHLIRSCIYMNPQAVISRFRNWNKIFVKKEDFIMQAEKYITQNGTEALEKLIASKTNRGRLLMGQNDIRDLEMIENEQLPEGKQVRFHIIFKLRKKRKKERKKSFSPILSHAGVDTALCSLKSNESTSSAMAKTEEMEVDTEGGTYPQVSASENVQKEWTCAICQLTMPSEANLNSHLQGRRHKAACEALNTKTKAKTAKDTGGGGSPQVSGSTNEQETKWTCGICQWTFPSEAKLKSHMYGKKHKAACEALEAKIQLLAEIVLEQEQTINTSNALPQNNSCRLRCEMCNVNCSSESVFASHLQGKKHLAQSQLLSGAWE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1900 420 SUPERFAMILY beta-beta-alpha zinc fingers 383 415 IPR036236 -
Lele16g1900 420 ProSitePatterns Zinc finger C2H2 type domain signature. 261 283 IPR013087 -
Lele16g1900 420 Coils Coil 349 369 - -
Lele16g1900 420 SMART c2h2final6 321 345 IPR013087 -
Lele16g1900 420 SMART c2h2final6 384 408 IPR013087 -
Lele16g1900 420 SMART c2h2final6 259 283 IPR013087 -
Lele16g1900 420 ProSitePatterns Zinc finger C2H2 type domain signature. 323 345 IPR013087 -
Lele16g1900 420 Gene3D Classic Zinc Finger 234 289 - -
Lele16g1900 420 Gene3D Classic Zinc Finger 365 414 - -
Lele16g1900 420 Gene3D Classic Zinc Finger 293 351 - -
Lele16g1900 420 PANTHER OS06G0651300 PROTEIN-RELATED 298 415 - -
Lele16g1900 420 SUPERFAMILY beta-beta-alpha zinc fingers 251 293 IPR036236 -
Lele16g1900 420 SUPERFAMILY beta-beta-alpha zinc fingers 304 355 IPR036236 -
Lele16g1900 420 Pfam Zinc-finger of C2H2 type 385 408 - -
Lele16g1900 420 Pfam Zinc-finger of C2H2 type 321 345 - -
Lele16g1900 420 Pfam Zinc-finger of C2H2 type 259 283 - -
Lele16g1900 420 ProSitePatterns Zinc finger C2H2 type domain signature. 386 408 IPR013087 -
Lele16g1900 420 SMART ZnF_U1_5 256 290 IPR003604 GO:0003676|GO:0008270
Lele16g1900 420 SMART ZnF_U1_5 318 352 IPR003604 GO:0003676|GO:0008270
Lele16g1900 420 SMART ZnF_U1_5 381 415 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1900 Lele-ChrLele16 11454737 11457929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1900 260 415 C2H2 Transcription Factor Family AT5G61190 30.233 3.24e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele16g1900 zf-met 3.2e-08 CL0361