Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1897 ATGACACGTGTCCCAGGAATCTCGTCTGATTCTGTTATGCTGGTCTGTACTCTTCTGAGCTCTGTCTTCTGGAAGATTGCGATTCGAAGGATCGAGAATTCGACGAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTAGAGAGCTATCAGTTCTTTGTGATGCAGAAGTTGGATTGATCGTCTTCTCTAGCACGGGAAAGCTCTATGACTTTGCAAGCACCAGCATGAAATCTGTTATTGAGCGCTATAACAAGGTTAAAGAGGAACATCTGATGCTTATGAATCCTGCTTCAGAAGTCAAGCTTTGGCAGAGAGAAGTAGCAAGCCTGAGGCAACAACTACAGTACTTGCAAGATTATCACAGGCAACTGATGGGCGAAGAACTTTCTGGTTTGGGAATTAACGAACTACAAAATCTGGAAAACCAGCTAGAGACGAGTTTGAAGGGTGTCCGCATAAGGAAGGGGAATCTCATTCATGAAGAAAATGCGCAGCTTCATAAAAAGTTAGATATCATCCAGAAAGAAAATGAAGAACTGAGAAAGAAGGCCAGTGCTCTTTATTCAAAAGGTAGAAGTTTCATATTACAGCAGCATAAGCCGAAGCCAGTTGACAATCAAGGTTGGTTGTCTGACAACAAGCTGTCAACAACCAGGTCCTGA 681 0.4288 MTRVPGISSDSVMLVCTLLSSVFWKIAIRRIENSTSRQVTFSKRRNGLLKKARELSVLCDAEVGLIVFSSTGKLYDFASTSMKSVIERYNKVKEEHLMLMNPASEVKLWQREVASLRQQLQYLQDYHRQLMGEELSGLGINELQNLENQLETSLKGVRIRKGNLIHEENAQLHKKLDIIQKENEELRKKASALYSKGRSFILQQHKPKPVDNQGWLSDNKLSTTRS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1897 226 ProSiteProfiles MADS-box domain profile. 25 81 IPR002100 GO:0003677|GO:0046983
Lele16g1897 226 MobiDBLite consensus disorder prediction 205 226 - -
Lele16g1897 226 Gene3D - 33 104 IPR036879 GO:0003677|GO:0046983
Lele16g1897 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 77 IPR002100 GO:0003677|GO:0046983
Lele16g1897 226 Coils Coil 169 196 - -
Lele16g1897 226 Pfam K-box region 104 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele16g1897 226 SUPERFAMILY SRF-like 25 111 IPR036879 GO:0003677|GO:0046983
Lele16g1897 226 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677|GO:0046983
Lele16g1897 226 PRINTS MADS domain signature 23 43 IPR002100 GO:0003677|GO:0046983
Lele16g1897 226 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677|GO:0046983
Lele16g1897 226 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele16g1897 226 CDD MADS_MEF2_like 25 97 IPR033896 GO:0000977|GO:0045944
Lele16g1897 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 25 187 - -
Lele16g1897 226 FunFam MADS-box transcription factor MADS-MC 33 105 - -
Lele16g1897 226 Coils Coil 140 160 - -
Lele16g1897 226 SMART madsneu2 25 80 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1897 Lele-ChrLele16 11420719 11433316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1897 25 197 MADS-box Gene Family AT4G37940 67.052 2.52e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele16g1897 K-box 2.1e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1897 16 11420719 11433316 Lele13g0608 13 18236101 18243271 CCT
Lele16g1897 16 11420719 11433316 Lele14g0505 14 16685274 16695851 CCT
Lele16g1897 16 11420719 11433316 Lele15g1875 15 11534931 11542975 CCT
Lele16g1897 16 11420719 11433316 Lele16g1906 16 11491901 11502057 CCT
Lele16g1897 16 11420719 11433316 Lele16g1897 16 11420719 11433316 ECH