Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1893 ATGGAGAATTACACGTACCCTTCGTACCCTGACTCGGGGGAGTCATCTCCTCGCTCCAGAGAGGTTGAATTCGAGAACCCTCCCCCGTGGGACGACCAGCAACCGCCGCCCAATTACAAAGCTAAATTCATGTGCAGCTATGGCGGGAAGATCCAGCCTCGCAGCCACGACAACCAGCTCTCCTACGTCGGCGGTGAGACCAAGATCCTCGCCGTTGACCTCAACATCAAGTTCTCCGCCATGATTTCCAAGCTCTCCGCCCTCTGCGACGGCGCCGATGTTACCTTCAAGTACCAGCTCCCCGGAGAAGAACTTGACGCCTTGATTTCCGTCAGCAACGACGACGATCTAGAGCACATGATGCACGAGTATGATCGGCTGTACCGTGCTTCCGCTAAGCCCGCTCGCATGAGGCTCTTCCTCTTCCCTGCTAATAGTAGTCAGGCATCGAGTTTTGCTTCCGATCAGGATCGCTTCGTGGAGGCTCTCAACACGGGTCCGGGTCCGACTCCGCCCGACTCGGTTAAGCCGGCTCCTGTTCCTGGCAGCAACGTCGACTTCCTCTTCGGTCTGGAGAAAGGAGTTCCTCCGGCGCAGCCACCGCCTGTGGCCGTTAAGTTTCATGACCCTGTTCCTGGACCGGTGGTGCCACCTCTGGAGTACCAAGTAAGAGGTGGCCCTGAACGGGTCATCGGTTCGGATCCTTCTGTGAACCCGATTGAAGTTCAAAGGCAGTTTCAGCGGATGCAAATTGGGGAGCATGATCAACCTATGTATAGGAGAAAGAGCGAGGATAATACGGCAGGTGGATATGCAGCCGGAGATTATTATCTTCAGAAATTCGCCGACAAGGCTCCTCCGTCGAATTTGCCGGCCACAGGACCACCAGCTGGAGGTTATTGGCCGGAAAAGCAAGTTCACAGCGAGGGTTTTCCGCCGATGACGGCGTCAAACGGATCCGGAGGAGCAGACCAGCCGGTTTATGTTATCCCACAGCCTGGAACTTTCTATCACGCGCCGCCGGTGGGGCGTCCTCCGGCGACGGCACCAGCCACTCAAGGTTACTACGCAGTGCAGCGAATGGTTTCTGATGCCTACCGTGAGCAGCCGCTTTACAGCGCCGCGGCGGCAGCGCCCCGAGCGCCATTTTCATCAGCGGCTCCGGCGACCTTGGCCCCACCTCAGCCTGTTAAATCTGCCGCGTATACAGATGGATTCAACGTGGTTCGCCAAGCTGGGATCCCAGATAACTCAGCAGCGTATGCACAGGTGGCGTACGATAATGCAGCAGGGAGACAGTTCTACTATACTGCGCCGGCAGGAGTGATGCAGCCGCCGCCGTACCAAGGGGCTGTTCCAACGGTGGGTGCCGATATAAGATCCGGCGGAGTATCATTGGGTCAAGATCTTAAAGTGGTCAATAAGGTTTCCCAAGGTTAA 1440 0.5674 MENYTYPSYPDSGESSPRSREVEFENPPPWDDQQPPPNYKAKFMCSYGGKIQPRSHDNQLSYVGGETKILAVDLNIKFSAMISKLSALCDGADVTFKYQLPGEELDALISVSNDDDLEHMMHEYDRLYRASAKPARMRLFLFPANSSQASSFASDQDRFVEALNTGPGPTPPDSVKPAPVPGSNVDFLFGLEKGVPPAQPPPVAVKFHDPVPGPVVPPLEYQVRGGPERVIGSDPSVNPIEVQRQFQRMQIGEHDQPMYRRKSEDNTAGGYAAGDYYLQKFADKAPPSNLPATGPPAGGYWPEKQVHSEGFPPMTASNGSGGADQPVYVIPQPGTFYHAPPVGRPPATAPATQGYYAVQRMVSDAYREQPLYSAAAAAPRAPFSSAAPATLAPPQPVKSAAYTDGFNVVRQAGIPDNSAAYAQVAYDNAAGRQFYYTAPAGVMQPPPYQGAVPTVGADIRSGGVSLGQDLKVVNKVSQG 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1893 479 SMART PB1_new 55 144 IPR000270 GO:0005515
Lele16g1893 479 SUPERFAMILY CAD & PB1 domains 56 152 - -
Lele16g1893 479 MobiDBLite consensus disorder prediction 1 38 - -
Lele16g1893 479 Pfam PB1 domain 56 143 IPR000270 GO:0005515
Lele16g1893 479 CDD PB1_UP2 44 142 - -
Lele16g1893 479 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 60 144 - -
Lele16g1893 479 MobiDBLite consensus disorder prediction 1 15 - -
Lele16g1893 479 Gene3D - 61 143 - -
Lele16g1893 479 PANTHER OS05G0427100 PROTEIN-RELATED 9 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1893 Lele-ChrLele16 11345186 11346625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1893 39 165 MAP Kinase Kinase Kinase AT5G57610 44.030 8.90e-28 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0617 13 18350727 18352172 Lele16g1893 16 11345186 11346625 hybridization
Lele14g0518 14 16872343 16873755 Lele16g1893 16 11345186 11346625 hybridization