Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1885 ATGGTTTCGTCGGAGATCGAGGTGGTGTCGTCGGACTCTAAAACCCCGAAAACTCTCGATGCTCCTCGCGTAGTAGACGTGTTCTCTGCCTGTTTTTGTGGGGACTTAGAGAAATTGAGGTGGTTTGTGGAACAAGAAGGTGCCTCCGTTTCTGTACCTGATTCCAATGGTATTATGCACTCCAATGGGCATCCCTTTATAACTTCCCAGATATTCTGCAGTATGTCATTAAGAAGCAAGAGTTGTAGCTTTCACGGGGGCGATGTCAACGCTACTGACCACATGCAACAGACGGCACTACACTGTGCGGCAGTTCGTGGTGCAACTACAGTGGCTGATTTGCTCTTGGAGAACCGTGCTCGGCTTGAGGCTGCTGATATATATGGATACAGGGCAGTTCACGTTGCTGCTCAACATGGACAAACAGCTTTCTTAAATCACATCATTGCAAAGTACAATGCTGACTTTGATGCACCCGATAATGAGGGACGAAGTCCTCTTCATTGGTTAAGATGCAAGAGAAGGGCTGCGTATAAGGGGTTTGCTGATACAACCCGATTGCTTTTATTCCGGGATGCATGCCAAGGGAGACAAGATAAAGATGTTTTAAAGGAGATGGTACTCAATAAAACTGGTATAGGTTGTACGCCGTTGCACTGGGCTGCAGTAAGAGGAAATGCAGAGGCATGCACTGTGCTTGTACACTCAGGCACAAAGAAAGAACTGATGGTGAAGGACAATGCTGGATCCACTCCTGTACAGCTTGCACATGATAAAGGTCGTCAGCATGTCGCCCTTTTCCTTGTACGTAACATTGTATTGATGATGTCGTTGGATTCTAAACAACAGAGAGCTCTGAGCAACCACTGGAGAGACAAAATTTGTTCTAGTTTTCAAAAGATTACTGCTGTTGTTGGTCTTTGGGCTTGGACAGCTCTTTCTCTGGCAGTTGGTAGCTTGATTATGTTCTATAGGTGCAGTAGTAAAGATCCTGGTTATATAAAACGACCAGGAGATTCAGGTGCTCATAGTGATGCAGAGGATCCTTTATTGAATATTGACATGAACAGCTCCTCTGTTTGGACAGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATCATAAGAACTGTCCGATCCAAGCATTGCCCCACTTGTAAGCGTTGTGTGGAACAGTTTGCCCACCATTGCCCATGGATATCTAACTGTGTGGGAAAGGTCAGGAATTGTGGAATTTGGACATCATCAGTAGGATTGTCAGAAGGAGAAACATGGATCCATCATTTGTTAGTACAGCATCCTGGTGCTATTGCATTTCTGGTGCTGGACACTTTTATTTTCATTGCTGCTATAGCTCGGAATATCACCACAAATGAAGTAGCAAACTCTACTAGATATGGGTATCTTCGTGGTCCTGATGGGAAGTTTAGAAATCCATACAACCTCGGCTGTAGGAAGAATTGTTCTGACTTCTTTTTTCAGGGATATACAAGTGATGATGATATTACTTGGCCTCCATTACAGCGGGTGGCGACGTAG 1539 0.449 MVSSEIEVVSSDSKTPKTLDAPRVVDVFSACFCGDLEKLRWFVEQEGASVSVPDSNGIMHSNGHPFITSQIFCSMSLRSKSCSFHGGDVNATDHMQQTALHCAAVRGATTVADLLLENRARLEAADIYGYRAVHVAAQHGQTAFLNHIIAKYNADFDAPDNEGRSPLHWLRCKRRAAYKGFADTTRLLLFRDACQGRQDKDVLKEMVLNKTGIGCTPLHWAAVRGNAEACTVLVHSGTKKELMVKDNAGSTPVQLAHDKGRQHVALFLVRNIVLMMSLDSKQQRALSNHWRDKICSSFQKITAVVGLWAWTALSLAVGSLIMFYRCSSKDPGYIKRPGDSGAHSDAEDPLLNIDMNSSSVWTGNWSQLCPTCKIIRTVRSKHCPTCKRCVEQFAHHCPWISNCVGKVRNCGIWTSSVGLSEGETWIHHLLVQHPGAIAFLVLDTFIFIAAIARNITTNEVANSTRYGYLRGPDGKFRNPYNLGCRKNCSDFFFQGYTSDDDITWPPLQRVAT 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1885 512 Pfam Ankyrin repeats (3 copies) 193 270 IPR002110 GO:0005515
Lele16g1885 512 Pfam Ankyrin repeats (3 copies) 86 158 IPR002110 GO:0005515
Lele16g1885 512 ProSiteProfiles Ankyrin repeat profile. 95 127 IPR002110 GO:0005515
Lele16g1885 512 ProSiteProfiles Ankyrin repeat region circular profile. 213 237 - -
Lele16g1885 512 FunFam S-acyltransferase 11 148 - -
Lele16g1885 512 Pfam DHHC palmitoyltransferase 367 406 IPR001594 GO:0016409
Lele16g1885 512 ProSiteProfiles DHHC domain profile. 367 405 - -
Lele16g1885 512 Gene3D - 5 293 IPR036770 -
Lele16g1885 512 SMART ANK_2a 162 202 IPR002110 GO:0005515
Lele16g1885 512 SMART ANK_2a 128 158 IPR002110 GO:0005515
Lele16g1885 512 SMART ANK_2a 213 242 IPR002110 GO:0005515
Lele16g1885 512 SMART ANK_2a 95 124 IPR002110 GO:0005515
Lele16g1885 512 ProSiteProfiles Ankyrin repeat profile. 213 245 IPR002110 GO:0005515
Lele16g1885 512 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 26 497 - -
Lele16g1885 512 SUPERFAMILY Ankyrin repeat 28 269 IPR036770 -
Lele16g1885 512 ProSiteProfiles Ankyrin repeat profile. 128 161 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1885 Lele-ChrLele16 11280829 11289146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1885 33 269 Miscellaneous Gene Families AT2G31820 25.941 1.89e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0622 13 18403096 18418612 Lele16g1885 16 11280829 11289146 hybridization
Lele14g0529 14 16924765 16932287 Lele16g1885 16 11280829 11289146 hybridization