Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1884 ATGGAGGATCCTACCTTTCTTCATCAATGGCACTTGAACTCTCTGGAAGATCCAAGCTTACTGCCACTGGCTGCTGCTTTTGGAGAGACCTTACAACAACAACATTCATTCTCAAACCCAACAACGTTGAATCCCAAAACTTGCATGGAAACTACACTTTCTGGCATTGAAAGGCCCCAGAAACAGATCAAACCCAACAATTGGAGCCCCAACACAAGTGATCAGAACCAGATATTAGACACAGACTATGATTATTGCTCCAATCTTCTTTCCTTTGTCAATTCAAGTTACATAAGCCAATTGGGGACAACATTAAAGCCTAATAAGGAGCAGAAGATCCCATGTCCTGAAATCAACAGCACAATTTCTGCATCAGACTTGTTGGCCTCCTCTCGCGGATCTTTGGAAAATCAGAACTTTGTCTTCAATGCCAGCCAAGATCCCAGAAAGAATAATATCGGAACAAATCCTAAACTTTCTCAACCTCAAGATCACATAATTGCTGAAAGAAAGCGACGAGAAAAGCTCAGCCAACGCTTCATTGCTCTATCTGCTCTTGTCCCTGGCCTAAAAAAGACGGACAAGGCTTCTGTTCTTGGGGATGCTATAAAGTATTTGAAGCAATTGCAAGAGAGAGTGAGGGTCCTTGAAGAGGAACAGAGTAGAAGGAGCACTGTGGAATCTGTGGTGGTTGTGAAGAAAACTCAATTATTATTAGCTGATGAAGAAGGAGATTGTTCTTCAGACTCTTCTGGTGAGCCCAGTGAGGAGCCATTACCAGAAATTGAAGCTAGATTTTGTGAGAGAAACGTCCTCATTAGAGTTCACTGTGAGAAAACAACAGGAGCCATAGAAAAAACTGTGAGTGAGATTGAGAAACTTCATCTCATAGTCACAAGTACTAGTGTCATGACGTTTGGCAGTTCTGCTCTTGATATAACCATTATTGCTCAGATGGATAAGGAATTTTGCATGAAAGTGAAGGAGCTTCTAAGAAGCCTACGCTCAGCTTTTGAATCCTTCATGTGA 1029 0.4189 MEDPTFLHQWHLNSLEDPSLLPLAAAFGETLQQQHSFSNPTTLNPKTCMETTLSGIERPQKQIKPNNWSPNTSDQNQILDTDYDYCSNLLSFVNSSYISQLGTTLKPNKEQKIPCPEINSTISASDLLASSRGSLENQNFVFNASQDPRKNNIGTNPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKTDKASVLGDAIKYLKQLQERVRVLEEEQSRRSTVESVVVVKKTQLLLADEEGDCSSDSSGEPSEEPLPEIEARFCERNVLIRVHCEKTTGAIEKTVSEIEKLHLIVTSTSVMTFGSSALDITIIAQMDKEFCMKVKELLRSLRSAFESFM 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1884 342 Coils Coil 199 219 - -
Lele16g1884 342 PANTHER BHLH TRANSCRIPTION FACTOR 28 338 - -
Lele16g1884 342 SMART finulus 166 215 IPR011598 GO:0046983
Lele16g1884 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 222 IPR036638 GO:0046983
Lele16g1884 342 Gene3D - 153 224 IPR036638 GO:0046983
Lele16g1884 342 CDD bHLH_AtNAI1_like 163 234 - -
Lele16g1884 342 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Lele16g1884 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1884 Lele-ChrLele16 11273981 11276255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1884 1 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.569 3.66e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele16g1884 HLH 2.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0622 13 18403096 18418612 Lele16g1884 16 11273981 11276255 CCT
Lele14g0529 14 16924765 16932287 Lele16g1884 16 11273981 11276255 CCT
Lele15g1858 15 11359055 11377012 Lele16g1884 16 11273981 11276255 CCT
Lele16g1884 16 11273981 11276255 Lele16g1884 16 11273981 11276255 ECH
Lele13g0623 13 18422884 18424905 Lele16g1884 16 11273981 11276255 hybridization
Lele14g0530 14 16936483 16938630 Lele16g1884 16 11273981 11276255 hybridization