Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1860 ATGGCGATAGGGAACCAGAGGTCACAATCCGATGGCAAGGCCTGGAATTTCTTCAGGCTTCCCTTTCGTGGCTCGGGGACTAATTTTGCTAATACGACGCCGTCCACCGCCGTCCACCATCACCATAATCCTCCTCCGATTGAGGGTTCAGCGTCTCATGGCTCCAATTCGGTTTCTTCAGTTGCAAGGTCGTTTCTTCCAACTCGACGTCGTCTCAAGCTTGATCCCGCCAATAAGCTCTACTTGCCTTATGAACCAGGCAAGCAGGTTAGGAGTGCTATAAAGATTAAAAACACTACCAAATCTCATGTAGCTTTCAAGTTTCAGACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCTGGAGCTATTCTTGCACCTGGTGAAAGTATCATAGCAACTGTGTTCAAGTTTGTTGAGCCTCCGGAAAATAATGAAAGGCCAGAGAAGAGCAGACTGAAATTTAAAATAATGAGCTTGAAGGTCAAAGGAGCAATTGATTACGTTCCTGAGATGTTTGATGAGCAAAAGGACCAAGCAGCAGTAGAGCAGGTTCTGCGTGTTGTTTTTCTAGATCCTGAGCATCCTAGTTCAGCCTTGGAAAAACTGAAGCGTCAGTTGGCCGATGCTGATGCTGCGCTCGAGGCACGAAAGAAACCTCCGGAAGATGCTGGTGCTAAGATTATTGGGGAAGGACTTGTCATTGATGAATGGAAAGAGAGGAGGGAAAGGTATCTTGCAAGGCAGCAGGTTGAAGGGGCAGTTGACTCTGAAGGGTACTTCCAGAAGCTGAAGTGGGTGGTGGTTAACTTCTACGAGGAACTAGACCCACCTGAAATGGTTCAGGATCTGAGATCCAAGATGAAGTCTCTAATCTACGCAGGATCAGTGGTTTCACCTCCTCCTCACGAGCTCGCCGCCATTGCAGAAGCACACGAAGATGTTCAATTTCTGTGGTCCCTTAAAGACGAATTGAAGGCTTTTCTTCCAAAGGAGTTTCTGGAAAGAACAAGCATGAAGGGGAAGCATCAATCCGAGACGCCTTCAACAAATACAATGTCGTCTCTCTGTCGCCTTCTCCAGCGCAACTTCTCTTCCTCCGCCGCCGCCGCTACCACCACCAACGTCCGGTCGTTATCGAAGAAGCTCTACAGGGAAAGGGACTACAACCTCCTCGTCCAGAAGTTCAAGGAAGCCTCCGAAGTCGATCGTTTCCGAACCAAAGATGGCATTTACGAACTCACGATTCGGCGCCTTGCCTCTGCCAAGCGTTTCAATTTGGTCGAAGAGATCCTGGAAGACCAAAAGAAGTATAAAGACATTTCCAGAGAAGGCTTCTCGGCTCGGCTGATCGGACTGTATAGTATAGCGGGCATGTTCGAAAATGCGCACAAGCTGTTCGATGGATTGCCCGAGAGAAATTGTAACCGTACGGTGCTATCTTTTAACGCCCTCTTGTCTGCTTATTTACGTTCTAAAAAATTTGGCATGGTAGATCGCCTTTTCAAGGAGCTGCCCTCAAAGCTGTCCATTGAACCGGATTTGGTGTCTTATAATACTGTCATTAAAGCATTTTGTGAAATGGGTTCGTTTGATTCCGCCATTGCCATGCTTGATGAGATGGAGGAGAAGGGCGTAAACCTAGGTTTGATAACTTTCAATACGCTGCTGGATGGGTTATATGTGAATGGTCGTTTTTCAGATGGTGACAAAATATGGAGCCAAATGCTGAAGAACAACGTTATCCCCGATATCAGGAGCTACAATGCTAAATTAGAGGGTTTGGTTGGGGAGAAGAAAATGAAAGAAGCGATTGAATTGATTGAGAAGATGAGAAATGAGGGCATCAAGCCTGATATTTATAGCATTAATGTTCTGATTAAAGGTTCCGTCAAGGAGAAAAATTTGGATGAAGCTAAGAAGTGGTATGGTGAAATAGCGAACACCGATTTCAACCCGAATAACACAACGTTTAAACTGCTTATTCCCTTTCTGTGTGAGAATGGTGATCTGGATTCTGCATACAAGGTATGCAAGGATATTTTCAAGAGTGGGAACTATGTTGAACCATCAATTCCGCAGCTTGTGGTGAATAAACTGGCGGAAAAGAAAAGGATTTTAGAAGCAAAGAAGATAGTGAAACTTGGAAATCGTTTTAAGCTAATTTTGCCGGAAGATAAGTAG 2184 0.4542 MAIGNQRSQSDGKAWNFFRLPFRGSGTNFANTTPSTAVHHHHNPPPIEGSASHGSNSVSSVARSFLPTRRRLKLDPANKLYLPYEPGKQVRSAIKIKNTTKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEPPENNERPEKSRLKFKIMSLKVKGAIDYVPEMFDEQKDQAAVEQVLRVVFLDPEHPSSALEKLKRQLADADAALEARKKPPEDAGAKIIGEGLVIDEWKERRERYLARQQVEGAVDSEGYFQKLKWVVVNFYEELDPPEMVQDLRSKMKSLIYAGSVVSPPPHELAAIAEAHEDVQFLWSLKDELKAFLPKEFLERTSMKGKHQSETPSTNTMSSLCRLLQRNFSSSAAAATTTNVRSLSKKLYRERDYNLLVQKFKEASEVDRFRTKDGIYELTIRRLASAKRFNLVEEILEDQKKYKDISREGFSARLIGLYSIAGMFENAHKLFDGLPERNCNRTVLSFNALLSAYLRSKKFGMVDRLFKELPSKLSIEPDLVSYNTVIKAFCEMGSFDSAIAMLDEMEEKGVNLGLITFNTLLDGLYVNGRFSDGDKIWSQMLKNNVIPDIRSYNAKLEGLVGEKKMKEAIELIEKMRNEGIKPDIYSINVLIKGSVKEKNLDEAKKWYGEIANTDFNPNNTTFKLLIPFLCENGDLDSAYKVCKDIFKSGNYVEPSIPQLVVNKLAEKKRILEAKKIVKLGNRFKLILPEDK 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1860 727 Gene3D Immunoglobulins 67 195 IPR013783 -
Lele16g1860 727 Gene3D Tetratricopeptide repeat domain 436 565 IPR011990 GO:0005515
Lele16g1860 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Lele16g1860 727 Pfam PPR repeat family 583 629 IPR002885 -
Lele16g1860 727 Pfam PPR repeat family 513 560 IPR002885 -
Lele16g1860 727 Gene3D Tetratricopeptide repeat domain 566 725 IPR011990 GO:0005515
Lele16g1860 727 ProSiteProfiles Major sperm protein (MSP) domain profile. 71 191 IPR000535 -
Lele16g1860 727 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 244 347 - -
Lele16g1860 727 SUPERFAMILY PapD-like 60 201 IPR008962 -
Lele16g1860 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 618 IPR002885 -
Lele16g1860 727 Pfam MSP (Major sperm protein) domain 72 181 IPR000535 -
Lele16g1860 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 549 583 IPR002885 -
Lele16g1860 727 Pfam PPR repeat 481 507 IPR002885 -
Lele16g1860 727 Pfam PPR repeat 450 475 IPR002885 -
Lele16g1860 727 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 337 716 - -
Lele16g1860 727 TIGRFAM PPR: pentatricopeptide repeat domain 481 514 IPR002885 -
Lele16g1860 727 TIGRFAM PPR: pentatricopeptide repeat domain 516 546 IPR002885 -
Lele16g1860 727 TIGRFAM PPR: pentatricopeptide repeat domain 587 620 IPR002885 -
Lele16g1860 727 TIGRFAM PPR: pentatricopeptide repeat domain 551 585 IPR002885 -
Lele16g1860 727 MobiDBLite consensus disorder prediction 29 62 - -
Lele16g1860 727 Gene3D Glycogen Phosphorylase B; 267 355 - -
Lele16g1860 727 SUPERFAMILY HCP-like 518 652 - -
Lele16g1860 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 619 653 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1860 Lele-ChrLele16 11121265 11127672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1860 458 713 Glycosyltransferase AT1G05670 27.308 1.82e-25 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1860 16 11121265 11127672 Lele13g0671 13 18803658 18805400 CCT
Lele16g1860 16 11121265 11127672 Lele14g0570 14 17220597 17222342 CCT
Lele16g1860 16 11121265 11127672 Lele15g1813 15 11035205 11036944 CCT
Lele16g1860 16 11121265 11127672 Lele16g1842 16 10981457 10983430 CCT
Lele16g1860 16 11121265 11127672 Lele16g1860 16 11121265 11127672 ECH