Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1858 ATGGGGAGATCACCGTGTTGTGACAAGAATGGCCTCAAGAAAGGCCCCTGGACTCCTGAAGAAGACCAGAAACTCATCGATTATATTCAGAAGCATGGCTATGGCAACTGGAGGACTCTCCCTAAGAATGCTGGGTTGCAGAGGTGTGGAAAGAGCTGTCGTCTCCGTTGGACCAACTATCTCCGACCAGATATCAAACGAGGTCGTTTCTCCTTCGAAGAGGAAGAGACCATCATTCAGCTTCACAGCATTCTCGGCAACAAGTGGTCGGCGATTGCTTCTCGTTTGCCGGGAAGAACAGACAACGAGATAAAGAACTACTGGAACACTCACATACGTAAGAGGCTTCTTCGTATGGGGATTGATCCCGTGACTCACTCCCCACGCTTAGACCTCCTGGACCTCTCTTCCATTCTCTATGCTTCTTCTTCCTCCTCCTCACACCTCAACAATAACATCGATCTTTCAAGCCTGCAAGCTCCTGTACTTAACCCTCACCTTCTCAAGCTAGCCTCTTCCCTCCTTTCATCTCAACGAAGAGACCAAAACCTCAACTTCTGCAATCAACAACAAATCCCAGATACTTCGATGTTTCAAGAAATGCAGGCCTTACCTACTGAATCACAGCCAACAATGCTCCAACACGATAATGTGGATCCCTATGACATTCCTTCAAACTTCCCCGAGTTTGGCGATTGGCAAAACAACAACAATACTGGGAATACTCTAACACAGGACTATGTTCCTGGGTTGTTACCGAACTTCCAATATTACAGTTCTGATGATCAGTATCAGAATCTTATGGACCTTCAGAATCATAATAACAACAACAACAACAATAATTTGAGCTTGGCTTCAGTTCAATCCACTCCGTCGAATTCGAATTCGACGTACATCAATGGAGGATGCAGCAGCACGGAGGATGAGAGAGAAAGCTATAACAGCAGCAACATGTTCAAGTTTGAAATCCCTGATATTCTACATGTTAATGACTTCAATAATGTAATGTTGTAA 1014 0.4487 MGRSPCCDKNGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILYASSSSSSHLNNNIDLSSLQAPVLNPHLLKLASSLLSSQRRDQNLNFCNQQQIPDTSMFQEMQALPTESQPTMLQHDNVDPYDIPSNFPEFGDWQNNNNTGNTLTQDYVPGLLPNFQYYSSDDQYQNLMDLQNHNNNNNNNNLSLASVQSTPSNSNSTYINGGCSSTEDERESYNSSNMFKFEIPDILHVNDFNNVML 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1858 337 FunFam Transcription factor MYB39 69 130 - -
Lele16g1858 337 Gene3D - 13 66 - -
Lele16g1858 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele16g1858 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele16g1858 337 FunFam MYB-related transcription factor 13 66 - -
Lele16g1858 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lele16g1858 337 MobiDBLite consensus disorder prediction 270 310 - -
Lele16g1858 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele16g1858 337 SMART sant 66 114 IPR001005 -
Lele16g1858 337 SMART sant 13 63 IPR001005 -
Lele16g1858 337 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lele16g1858 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele16g1858 337 CDD SANT 16 61 IPR001005 -
Lele16g1858 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele16g1858 337 Gene3D - 69 116 - -
Lele16g1858 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 275 - -
Lele16g1858 337 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1858 Lele-ChrLele16 11104799 11105997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1858 1 332 MYB Transcription Factor Family AT4G21440 55.946 6.81e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele16g1858 Myb_DNA-binding 1.6e-16 CL0123