Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1856 ATGTGTTTCCAGTTCGAGGTTAATGGAGATGGCGTCATCAGCACTGCACTCAATCATATTGAGGCTGCAAGACTAGCTACTTTCCACAACTATGAGGAATCAGAAGACCAGCTTGATGCCAATTTTAATACGCCTCTTTGGGCCCGAAAAAACCCTTTTCTTTTTCTCTGTGCTCTGCGAGATATATGGGGTATTTTCACCTTTCTTAACCAATTTTCTCGAGAAAAATCTCAATTTCCAGAAAGATTGGATTTTTCTGGGAAAATCGAAATGGGTGAGGAGGAAGTTTTGCCGGATCATCTGCGCTGCAAGCGCACCGACGGGCGCAAATGGCGGTGTAGCCGGAGAGTGATGGACAACGTGAAGCTTTGTGAGATTCACTATCTTCAAGGCCGCCATCGGCAATACAAGGAAAAGGTCCCGGAGTCGCTGAAGCTTCAGAGAAAGCGTAAGAAAGGGCTTAATAAGGACGAATCTGTTCTCAACAATGCGGAAGTGAAGGCACGGAAAGTGGTCAAGATGGCGAAGATGATGAGAAAAAGGATAAAAGTGTCAGATGATTCGGAGGCAATGGAAGCTCCTGTGGGGAAGAAGGCGTCCAAGCAGGGTAATAAGCAGTTGGAGTTGATAAGGATGGTGCTGAAGAGAGAGGTTGAGAAAAGGAAGAAGAAGCAGGGAGAGAAGATGAAGAGGAAGAAGGAGGAGGAGGAGGAAGAGGAATTGCATTACGGTGAGGGAGAGTTAACAAAAGAATTGCCCAATGGTTTAATGGCAATTTCTAGGGCATCAACGGCCCAAGAATACTGCAATGTAGGTTCCCAATGTGATGTCAAATTATGTGTTGATCATAAGGCAATTACTCCACGTTACTTCAGGTCCAAGAATGTCGAGAGGCTGCCTGGGGGAAAGTTGCAGGTTTTACCGTATGGACGCAAGTGTAAGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGGAATCTCATAAAGTGTTCAAGCTGTCAAAAAGAGTTTTTCTGCATGGATTGCATTAAAGAACGGTATTTTGATACTCAAAATGAAGTTAAGATGGCATGTCCAGTTTGTCGAGGAACTTGCTCATGTAAAGACTGCTTGAGAAGCAAATGTAAAGACAACGAAACTAAGGAATTTTTGGCTGGTAGAAGCAAAGTTGATAGAATATTGCATTTTCATTATTTGATTTGCACGCTCCTTCCCATACTGAAACAAATAAATGAAGATCTCAATGCTGAGGTCGAAACAGAAGCTAAAATCAGAGGTAAAAGACAATCTGATATTCACATCAAGCAAGTTGAATTTTCCAGCAATGACCAGACTTACTGCAATCAATGCAAAACACCCTTTTTGGATCTCCATAGAAGCTGTCCAAGTTGTTCCTATAGCCTTTGCATAACTTGTTGCAGGCAATTGTATCCAAGGAACTGCTCTGAAGAAATTAATACATCTATTCCCTGGTCATCTGATGGGATGGATGCCTGTCTTGCCAGCGAAAATCATCTTTTGGATAAGAAGGCCATCACCAACGGAAATTCAGTAGCTACTTTTTCATTGCATATATGCACAAACTCTGACAGTACTGGCAGTGTATCTTGTCCTCCAAAAGAACTTGGTGGTTGTGGTGATAATATTCTTGAATTAAGATGTATTTTTCCTTTAAGCTCGATCAAGGAGATGGAAGTAACAGCAGAAGAAATAGTTTGCAGCTACGACTTTCCTGAAACTTTGGACAAAAGTTTGAGCTGCTCATTGTGTCCAGACACGGTTAATAAACTTGATGGATTTAAGCAGTTACGAGAAGCAGCTCTTAGAGAAGATTCAAAAGACAATTGGTTGTTTTATCCCACTGTTTTGGACATCGGTGATGATAACTTTGAACACTTTCAGAAGCACTGGGGAAAAGGCCATCCGGTAGTGGTGCGAGATGTGCTCCAAAATACATCAAACCTCAGTTGGGATCCACGGGTCATGTTCTGTACTTATCTTGAGGGTAGCATCTCAAGATATGAGAATGGCAAGGATGAACTTGAAACTTGTTTAGATTGGTGTGAGGTGGAAATTAACATTAGGCAGTGCTTTACTGGATCTCTTAAATGTCAGCCACATAAAAACATGTGCCATGAGATGCTGAAATTGAAGTGGTTACTGTCTTCCCGACTATTCAAAGAATGGTTTCCAGCTCATTTTGCGGAAGTAATTGATGCTCTACCGCTTCAAGAATACATGAATCCTACATCTGGTTTTCTGAATTTAGCCATAAATACGGCCCAGGGGAGTGCAAAGCATGACCTAGGACCATATATCTATCTTTCATATGGCTGTGGTGATGAACAGAGTGACTTTGTGACGAAACTGTCTTATGATTCATATGATGTGGTTAATATTATGGCTCACACCACGGATGCCCCTCTCTCTACACAACAGCTGGCTAAAATAAGGAAGCTGCTGAAAAAGCACCAAAGTCTGTGTCGAAGGGATTCTTCTGAAATTAGTGCTGAACAATTAAAGGAACAGAGAGGGAAAGTAAATTCATTACTGCCTGCTGAAGACATTGAAAAAACCGGGTTGCATAGAAAGGAGAGAGAAGAAAAGCATTTTTTCAGGAGAGTCAACAGAACAGCTTGCATTGCTACTGAAGCAACAGATGTAGCTTATCAGAGTATAGACGGCAAAATTTCCCAGGATGAAGAATGTGATTCTGATTCCGATTCAGAAAATCCCTATGGAAGTTCAAATAATAATAGAAATGAAAAGTTTATTAAACGTTCTGGTGCCCAGTGGGATGTCTTTCGCAGACAAGATGTTCCAAAGCTCTTAGAATACCTTAAAAGACACTCTGCTGAATTTTCTCCTTCCCATGACAATCACAAGCAGGTGGATCATCCGCTTTTAGATCAGAGCTTCTTTCTTAACAACACTCACAAGATGAGGCTCAAGGAGGAATATAAAATTGAACCATGGACTTTTGAGCAACATGTCGGCGAAGCTGTCGTTATTCCTGCTGGATGTCCATACCAGATTAGAAATTCTAAGTGTTGTGTTCATGTAGTGTTGGAATTTGTTTCCCCTGAGAATGTCGCCGAGTGTATTCAATTGATCGATGAAGCACGTCAGCTTCCAGAAAACCACGAAGCAAAAGTTGACCATCTTGAGGTGAAGAAAATGGCTCTTGATAGCATCGATTCAGCAATAAAAGAGATACGTGAACTAACCTCCAAAACGTGA 3246 0.4159 MCFQFEVNGDGVISTALNHIEAARLATFHNYEESEDQLDANFNTPLWARKNPFLFLCALRDIWGIFTFLNQFSREKSQFPERLDFSGKIEMGEEEVLPDHLRCKRTDGRKWRCSRRVMDNVKLCEIHYLQGRHRQYKEKVPESLKLQRKRKKGLNKDESVLNNAEVKARKVVKMAKMMRKRIKVSDDSEAMEAPVGKKASKQGNKQLELIRMVLKREVEKRKKKQGEKMKRKKEEEEEEELHYGEGELTKELPNGLMAISRASTAQEYCNVGSQCDVKLCVDHKAITPRYFRSKNVERLPGGKLQVLPYGRKCKRKKCHWCQRSDSWNLIKCSSCQKEFFCMDCIKERYFDTQNEVKMACPVCRGTCSCKDCLRSKCKDNETKEFLAGRSKVDRILHFHYLICTLLPILKQINEDLNAEVETEAKIRGKRQSDIHIKQVEFSSNDQTYCNQCKTPFLDLHRSCPSCSYSLCITCCRQLYPRNCSEEINTSIPWSSDGMDACLASENHLLDKKAITNGNSVATFSLHICTNSDSTGSVSCPPKELGGCGDNILELRCIFPLSSIKEMEVTAEEIVCSYDFPETLDKSLSCSLCPDTVNKLDGFKQLREAALREDSKDNWLFYPTVLDIGDDNFEHFQKHWGKGHPVVVRDVLQNTSNLSWDPRVMFCTYLEGSISRYENGKDELETCLDWCEVEINIRQCFTGSLKCQPHKNMCHEMLKLKWLLSSRLFKEWFPAHFAEVIDALPLQEYMNPTSGFLNLAINTAQGSAKHDLGPYIYLSYGCGDEQSDFVTKLSYDSYDVVNIMAHTTDAPLSTQQLAKIRKLLKKHQSLCRRDSSEISAEQLKEQRGKVNSLLPAEDIEKTGLHRKEREEKHFFRRVNRTACIATEATDVAYQSIDGKISQDEECDSDSDSENPYGSSNNNRNEKFIKRSGAQWDVFRRQDVPKLLEYLKRHSAEFSPSHDNHKQVDHPLLDQSFFLNNTHKMRLKEEYKIEPWTFEQHVGEAVVIPAGCPYQIRNSKCCVHVVLEFVSPENVAECIQLIDEARQLPENHEAKVDHLEVKKMALDSIDSAIKEIRELTSKT 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1856 1081 MobiDBLite consensus disorder prediction 899 924 - -
Lele16g1856 1081 Gene3D Cupin 881 1053 - -
Lele16g1856 1081 Gene3D Cupin 623 880 - -
Lele16g1856 1081 MobiDBLite consensus disorder prediction 219 244 - -
Lele16g1856 1081 ProSiteProfiles Zinc finger RING-type profile. 318 364 IPR001841 -
Lele16g1856 1081 SMART cupin_9 732 1044 IPR003347 -
Lele16g1856 1081 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 98 1080 IPR045109 GO:0032454|GO:0033169
Lele16g1856 1081 Coils Coil 215 239 - -
Lele16g1856 1081 Pfam JmjC domain, hydroxylase 931 1025 IPR003347 -
Lele16g1856 1081 ProSiteProfiles WRC domain profile. 97 143 IPR014977 -
Lele16g1856 1081 ProSiteProfiles JmjC domain profile. 747 1044 IPR003347 -
Lele16g1856 1081 Pfam WRC 98 139 IPR014977 -
Lele16g1856 1081 SUPERFAMILY Clavaminate synthase-like 631 1070 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1856 Lele-ChrLele16 11075802 11085497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1856 83 137 GRF Transcription Factor Family AT2G22840 47.273 8.23e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele16g1856 JmjC 3.8e-10 CL0029