Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1847 ATGGCGACTCACCTTCCCGACCACCTTAAGTGTCCGATTTCCCTTGAGATAATGTCCGACCCAGTTATCCTTTCCTCGGGTCACACCTTTGACCGTGCTTCTATCCAACGGTGGCTCGACGCCGGTCACCGGGTTTGTCCAATTACCAAATTACCCCTCCCTGATCACCCTTCCCTCATCCCCAACCATGCTCTCAGGAGCTTGATTTCCAACTATGCTCTCATTTCGCCTCTACAGAAGCAGCTGCCTCCCCAACCTGAAACCCTAATCTCCTTGCTCACTTCTCGGTCTTCACCCTTGGAATCTAAAATTGAATTACTAGACCAACTCACCCGTCTTTCCAAGCGTGACTCGGTGTTTCGCCGGCGGTTGACTGAGTCAGGGGTAGTGTCGGCGGTGCTGAACTGCGTTGACTCCCGTGATTCTGGTCTTCAGGAGAAGGCCCTCTCCTTGCTATTGAATCTAAGTCTTGACGATGATAACAAGGTGGGCTTGGTGGCGGAAGGTGTGATACGTCGAGTTGTGGCTGTTCTGCTGGGGGGCTCACCGAATTGCAGAGCGATTGCAGCAACTATGCTGACAAGCTTAGCGGTTGTGGAAGTTAATAAAGTCACGATTGGTGCATACCCATGTGCGATTGAAGCTCTGGTTTCGCTTCTTCGGAATGGTAAAGGAAGAGAGAAGAAGGAAGCTGCCACGGCGCTTTATGCCATCTGTTATTTTGCTGATAATCGAAGGAGAGCTGTAGAATGTGGGGCTGTTCCCATTTTGCTCGGAACCGCTGATTCTGGGCTTGAGAGGGCTGTTGAAGTTCTAGGTATTCTGGCTAAGTGTAAGGAAGGTAGGGGACAAATGGAAAGCTACCATGGATGCATACAGATTATGTCTCGGGTTTTGAGGAATGGAAGCTCGAGGGGAATTCAATATGCGCTGTTGGCATTGAACTCTCTTTGTTGTAGTAGTGAAAAAATGAGATTAGAGGCCGTAAAAGAAGGAGTTTTGCAGATCGGTCTTGCGTTGCTGGATGATGATAACGAGAAAGTAAGGAGAAACTCGGCCAATTTGATTCAGGTTCTGCGTGGAAACCAGTGGACAAGTTGA 1101 0.4932 MATHLPDHLKCPISLEIMSDPVILSSGHTFDRASIQRWLDAGHRVCPITKLPLPDHPSLIPNHALRSLISNYALISPLQKQLPPQPETLISLLTSRSSPLESKIELLDQLTRLSKRDSVFRRRLTESGVVSAVLNCVDSRDSGLQEKALSLLLNLSLDDDNKVGLVAEGVIRRVVAVLLGGSPNCRAIAATMLTSLAVVEVNKVTIGAYPCAIEALVSLLRNGKGREKKEAATALYAICYFADNRRRAVECGAVPILLGTADSGLERAVEVLGILAKCKEGRGQMESYHGCIQIMSRVLRNGSSRGIQYALLALNSLCCSSEKMRLEAVKEGVLQIGLALLDDDNEKVRRNSANLIQVLRGNQWTS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1847 366 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Lele16g1847 366 SUPERFAMILY RING/U-box 4 73 - -
Lele16g1847 366 Gene3D - 265 360 IPR011989 -
Lele16g1847 366 PANTHER U BOX DOMAIN-CONTAINING 6 355 - -
Lele16g1847 366 SUPERFAMILY ARM repeat 87 359 IPR016024 -
Lele16g1847 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
Lele16g1847 366 SMART arm_5 241 277 IPR000225 GO:0005515
Lele16g1847 366 SMART arm_5 117 157 IPR000225 GO:0005515
Lele16g1847 366 SMART arm_5 202 240 IPR000225 GO:0005515
Lele16g1847 366 SMART arm_5 158 198 IPR000225 GO:0005515
Lele16g1847 366 SMART arm_5 320 361 IPR000225 GO:0005515
Lele16g1847 366 Gene3D - 82 264 IPR011989 -
Lele16g1847 366 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Lele16g1847 366 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Lele16g1847 366 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Lele16g1847 366 CDD RING-Ubox_PUB 11 50 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1847 Lele-ChrLele16 11018575 11019675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1847 1 361 U-box Gene Family AT4G21350 61.247 2.05e-150 427