Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1842 ATGCTCAAGGGTATATTTGTAAATTACTACACCAAAGACCAACCCTTTACCTGCTATAAGGATAAGCATAGATCTGAAAGTCAGAGCCTCTCCCTTTGTTTCTTGGTTATAAGATCGTTATTCATAGATTCCATACTCTTTCAAGCTGCCGTTTTTCTCGCCGGAATCTTCACTGGGACTTGGCCCTGGAAATGGGTTTGTTTCAGAACAAGTGAGAAGGAACGAAAAATGGGTGAAGGAGAGGGAGGTAGAAAAGCTATAACAGACCAGGATTCGCTGGAATCGTTCGCCGGAGGTGGTTCCAGTATCCCTCGAGCTGTCAAGTTTATATCTTCCTTGATTTCCCTCTCCCATTCAGTCAGAGTCTTCGCGGCAAAATGGCAACTGATTCGGAACAAGCTCGAGGAGCTCCATTCAGGACTAATCGCCTCCGAGAACTGCGATTCCGGCGAGAACCAATCGCTCTCCGGTCTGGTTCCTGCGATACTGGCCACCGCGAACGACTGCCATGATCTCGTTCGCCGGTGCGTTGATCTTTCGTACAGCGGGAAGCTTTTGATGCAGAGCGATTTGGATGTGATGTTCGCCAGGTTCGCTTCTCACTCGAGGAAGCTATCAGAGGTATATTCAACTGGTATTTTGACTCACAAGTATGCCCTCGTTGTTTCGAGGCCTATTCTCGGAGCTTGCAAAGATGATATGAGGTTTTACATGAGGGACTTGCTGACGAGAATGAAGATTGGCGATGTGGGAATGAAGAGACAGGCTCTGATTAATCTGCACGAGGCTGTAGCGGAAGACGAAAGGTATGTGAAAATGATTGTGGAAATAGGAGATATTGTTCATCTTCTGGTAAATTTTCTCGATTCACCGGAGATGGAAATCCAAGAAGAATCCGCCAAGGTGCTTTCTGTGATCGCAGGCTTTGATTCCTACAGAGGGTTTTTGATCACATCAGGGATTATTGCGCCTCTGATCCGAGTTTTGGAATGTGGGAGTGAGTCAGGGAAGATCGGGGCTGCCAGGTGTTTGATGAAATTAACGTTCAATTCAGACAATGCTTGGTCGGTTTCAGCTCATGGGGGAGTCACGTGCTTGCTCAAAACCTGCTCTAATGGAGAACCCAAAGGAGAATTGGTTGGTCCTTCTTGTGGGGTACTCAGAAATCTTGTAGGTGTTGAAGAAATAAAGAGATTCATGATTGAAGAAGGTGCGGTTTCTACGTTTATCAGGCTTGTGAAATCCAGGGACGAAGCGATTCAGGTAAATTCCATACAATTCATTCAAAGCATAGCCTCTGGAGATGAACAGATTAGGCAAATGGTGATTAGAGAAGGTGGAATTCGGGCTTTATTACGCATTCTAGATCCTAAATGCTCATGTTCTTCCAAAACCAGGGAGATAGCAATGAGAGCTATAGAAAACTTGTGTTTTTCTCCATCTAGTTCTGTAAGTATATTAATGAGTTATGGCTTTGTGGATCAACTGCTATATTATATTCGTAATGGGGAAGTTTCAATCCAAGAATTAGCTCTGAAAGTGGCCTTCAGATTCTGTGGAACATCAGAGGAAGCTAAGAAAGCCATGGGCGATGCAGGTTTCATGCCAGAGCTTGTTAAGTTTCTAAATGCGAAAAAATTCGAAGTTCGTGAAATCGCAGCTGAATCACTCTCTGCCTTGGTTATGGTGCCCAAGAACAGAAAGAAATTTGTGCAGGATGATCAAAACATAGCTCTTCTTCTCCAACTGCTTGATCCAGAAGAGGGAAATTCAAGTCACAAGAAGTTCCTAATCTCTATCTTAATGTCATTAACAAGTTGTAACAGTGGGAGAAAAAAGATTGTGAGTTCTGGTTATGCCAAAAACATAGAGAAACTTGCAGAAGCTGAAGTTTCATCAGATGCCAAGAGGCTTGTGAGGAAGCTATCCAGAAACAGATTCCGCAGTATGTTGAGTGGAATCTGGCACTCATGA 1974 0.4407 MLKGIFVNYYTKDQPFTCYKDKHRSESQSLSLCFLVIRSLFIDSILFQAAVFLAGIFTGTWPWKWVCFRTSEKERKMGEGEGGRKAITDQDSLESFAGGGSSIPRAVKFISSLISLSHSVRVFAAKWQLIRNKLEELHSGLIASENCDSGENQSLSGLVPAILATANDCHDLVRRCVDLSYSGKLLMQSDLDVMFARFASHSRKLSEVYSTGILTHKYALVVSRPILGACKDDMRFYMRDLLTRMKIGDVGMKRQALINLHEAVAEDERYVKMIVEIGDIVHLLVNFLDSPEMEIQEESAKVLSVIAGFDSYRGFLITSGIIAPLIRVLECGSESGKIGAARCLMKLTFNSDNAWSVSAHGGVTCLLKTCSNGEPKGELVGPSCGVLRNLVGVEEIKRFMIEEGAVSTFIRLVKSRDEAIQVNSIQFIQSIASGDEQIRQMVIREGGIRALLRILDPKCSCSSKTREIAMRAIENLCFSPSSSVSILMSYGFVDQLLYYIRNGEVSIQELALKVAFRFCGTSEEAKKAMGDAGFMPELVKFLNAKKFEVREIAAESLSALVMVPKNRKKFVQDDQNIALLLQLLDPEEGNSSHKKFLISILMSLTSCNSGRKKIVSSGYAKNIEKLAEAEVSSDAKRLVRKLSRNRFRSMLSGIWHS 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1842 657 SUPERFAMILY ARM repeat 239 639 IPR016024 -
Lele16g1842 657 Gene3D - 238 646 IPR011989 -
Lele16g1842 657 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 102 656 - -
Lele16g1842 657 SMART arm_5 522 562 IPR000225 GO:0005515
Lele16g1842 657 SMART arm_5 309 349 IPR000225 GO:0005515
Lele16g1842 657 SMART arm_5 267 308 IPR000225 GO:0005515
Lele16g1842 657 SMART arm_5 435 478 IPR000225 GO:0005515
Lele16g1842 657 SMART arm_5 393 433 IPR000225 GO:0005515
Lele16g1842 657 SMART arm_5 350 392 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1842 Lele-ChrLele16 10981457 10983430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1842 221 511 U-box Gene Family AT2G23140 25.589 2.22e-12 68.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1831 15 11188386 11191536 Lele16g1842 16 10981457 10983430 CCT
Lele16g1860 16 11121265 11127672 Lele16g1842 16 10981457 10983430 CCT
Lele13g0689 13 18953127 18968110 Lele16g1842 16 10981457 10983430 CCT
Lele14g0588 14 17359667 17369268 Lele16g1842 16 10981457 10983430 CCT
Lele15g1794 15 10865001 10874824 Lele16g1842 16 10981457 10983430 CCT
Lele16g1825 16 10826679 10837868 Lele16g1842 16 10981457 10983430 CCT
Lele13g0671 13 18803658 18805400 Lele16g1842 16 10981457 10983430 hybridization
Lele14g0570 14 17220597 17222342 Lele16g1842 16 10981457 10983430 hybridization