Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1841 ATGGAGTGCAAGAGGAAGAAGGAATGGCCAGAGTCAAACTATTCAAATCGAGCTACAACTTTTCCAGATGAGGTTCTGGAACGAGTTCTGAGTCTGCTAAAATCACCCAAAGATCGAAGCTCTGTTTCCTTGGCTTGCAAAGACTGGTATAACGCTGAACGATGGTCTAGAAGTCATGTGTTCATTGGAAACTGTTATTCTGTGTCTCCTGAGATCTTGACCCGTCGCTTCCCAAACATACGTAGTGTGACATTAAAAGGGAAGCCTCGTTTCTCAGATTTCAACTTGGTTCCCCCTAATTGGGGAGCTGATATTCATTCATGGCTTATGGTGTTTGCCAAAAAATATCCATTGCTTCAGGAGTTGAGGCTCAAGAGGATGACTGTGACTGATGAGAGCCTTGAGTTTTTGTCTCTGTCCTTTCCCAATTTCAAAGCTCTTTCTCTTTTGAGTTGTGATGGATTCAGCACCGATGGATTGGCTGCGATTGCCACTAATTGCAAGAACTTAACAGAGCTTGACATACAGGAGAATGGCATTGAAGATAGAAGTGGTAATTGGTTGAGTTGTTTCCCTGAGAGCTTCACTTCGCTGGAAGTACTTAACTTTTCCAACCTGCATAGTGATGTAAATTTCGATGCACTTGAGAGACTTGTCAATAGGTGCAAATCATTTAAGACTTTGAAGGTTAATAAAAGCATAACATTGGAACAATTACAAAGGTTGCTTGTTCATGCTCCTCAATTAGTAGAGCTCGGTACTGGCACATTTTCACAAGAGCTGACAGTGCAGCAGTACTCTGAGCTGGAAACTGCATTCAACAATTGTAAAAATATTCACACCCTTTCTGGTTTATGGGCAGCTACAGCACAATTTCTCCCAGTTCTGTACCCAGCTTGCACAAATCTCACTTTCTTGAATTTGAGTTATTCTACCCTTGACGGCGATGATCTTGCTAAGCTCCTTGTTCTCTGTCCAAATCTTAGGCGCCTCTGGGTCTTGGACACAGTGGAAGACAAGGGGCTGGAAGCTGTTGGATCATACTGTCCTTTGCTCGAGGAACTGCGTGTTTTTCCTGCAGATCCCTTTGATGAAGGTATTGTCCATGGAGTGACTGAAGCAGGGTTTATTGCCGTGTCTTGTGGATGTCCGAGACTACATTATGTTCTCTACTTTTGCCGTCAGATGACTAACGCTGCTGTAGCTACTGTTGTTCAAAACTGTCCAGACTTCACTCATTTTCGGCTTTGTATAATGAACCCTCGTCAGCCAGATTACCTAACAGATGAGCCTATGGATGAGGCTTTCGGGGCAGTTGTAAAGACTTGTACGAAACTCCAGAGGCTTGCAGTATCAGGTTTGTTGACTGACCTAACATTTGAGTATGTAGGGAAGTATGCCAAAAACTTGGAAGCACTTTCAGTGGCATTTGCTGGAAGCAGTGATTGGGGTATGCAATGTGTGCTGGAAGGTTGTCCAAAGCTGAGAAAACTGGAGATAAGGGATAGTCCATTTGGCAATGCAGCGCTTTTATCGGGTTTGGAGAAGTACGAATCAATGAGATCGCTGTGGATGTCAGACTGCAATGTGACATTGACTGGTGCTAGATTGTTGGCCAAAGAAATGCCCAGGTTGAATGTTGAAGTGATCATGGAAGAAGGAATTGATACCAGTAAAGCTGATAGAGTTTATGTTTATCGTTCTGTTGCTGGTCAAAGAAGGGATGCCCCTCCCTTTGTTCTCACCCTCTGA 1752 0.4372 MECKRKKEWPESNYSNRATTFPDEVLERVLSLLKSPKDRSSVSLACKDWYNAERWSRSHVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHSWLMVFAKKYPLLQELRLKRMTVTDESLEFLSLSFPNFKALSLLSCDGFSTDGLAAIATNCKNLTELDIQENGIEDRSGNWLSCFPESFTSLEVLNFSNLHSDVNFDALERLVNRCKSFKTLKVNKSITLEQLQRLLVHAPQLVELGTGTFSQELTVQQYSELETAFNNCKNIHTLSGLWAATAQFLPVLYPACTNLTFLNLSYSTLDGDDLAKLLVLCPNLRRLWVLDTVEDKGLEAVGSYCPLLEELRVFPADPFDEGIVHGVTEAGFIAVSCGCPRLHYVLYFCRQMTNAAVATVVQNCPDFTHFRLCIMNPRQPDYLTDEPMDEAFGAVVKTCTKLQRLAVSGLLTDLTFEYVGKYAKNLEALSVAFAGSSDWGMQCVLEGCPKLRKLEIRDSPFGNAALLSGLEKYESMRSLWMSDCNVTLTGARLLAKEMPRLNVEVIMEEGIDTSKADRVYVYRSVAGQRRDAPPFVLTL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1841 583 SMART LRR_CC_2 383 407 IPR006553 -
Lele16g1841 583 SMART LRR_CC_2 443 466 IPR006553 -
Lele16g1841 583 SMART LRR_CC_2 116 140 IPR006553 -
Lele16g1841 583 SMART LRR_CC_2 492 516 IPR006553 -
Lele16g1841 583 SMART LRR_CC_2 141 166 IPR006553 -
Lele16g1841 583 SMART LRR_CC_2 300 324 IPR006553 -
Lele16g1841 583 SMART LRR_CC_2 325 348 IPR006553 -
Lele16g1841 583 Pfam F-box 19 59 IPR041567 -
Lele16g1841 583 FunFam Transport inhibitor response 1 58 583 - -
Lele16g1841 583 SUPERFAMILY F-box domain 18 72 IPR036047 GO:0005515
Lele16g1841 583 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 20 181 - -
Lele16g1841 583 Gene3D Ribonuclease Inhibitor 58 583 IPR032675 -
Lele16g1841 583 SMART fbox_2 21 62 IPR001810 GO:0005515
Lele16g1841 583 FunFam Transport inhibitor response 1 17 57 - -
Lele16g1841 583 Pfam Leucine Rich repeat 167 182 IPR001611 GO:0005515
Lele16g1841 583 Pfam Transport inhibitor response 1 protein domain 78 124 IPR041101 -
Lele16g1841 583 SUPERFAMILY RNI-like 77 550 - -
Lele16g1841 583 Gene3D - 16 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1841 Lele-ChrLele16 10969909 10974292 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1841 16 10969909 10974292 Lele13g0674 13 18838069 18838923 CCT
Lele16g1841 16 10969909 10974292 Lele14g0574 14 17254250 17255313 CCT
Lele16g1841 16 10969909 10974292 Lele15g1810 15 11000849 11001694 CCT
Lele16g1841 16 10969909 10974292 Lele16g1838 16 10950912 10951796 CCT
Lele13g0505 13 17241150 17245296 Lele16g1841 16 10969909 10974292 hybridization
Lele14g0431 14 15966906 15968514 Lele16g1841 16 10969909 10974292 hybridization