Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1839 ATGCGAGGTTTCACTTTCTATCAACGAGTCTCCAAAGCTTTCCTTGAATCCTCTTCCCTTTCCAAGTTTCTTGTGCTTTTCACCGTAAGTGGTGGAACAGGTGCCCTTGTGGCTTATGCAGAAGCAAATGGAAGCAATAATGGAGCATACATTGGTTCTTCATCATCAGAAACAGTTCCGGAAAAGAAAAAGGTGGTGGTGCTGGGAACTGGCTGGGCCGGCACAAGTTTCTTGAGGAACCTAAACAACCCCAGATATGAGGTTCTGGTGGTCTCGCCTCGTAACTATTTTGCATTCACTCCTCTGTTGCCCAGCGTCACTAGCGGTACTATCGAAGCTCGCAGCATTGTTGAACCTATTCGCAATATTTTTAGGAAGAAAAGAATGGACATTGAATATAGTGAAGCCGAGTGTCTCAAGATTGATTCAGAAAACAGGAAAATTTACTGTCGATCCAATATAAACAACAATTTGAACGGGAAACAAGAATTTGTTGTGGACTATGATTACCTAATCATAGCCGTGGGGGCTAATGTCAACACATTTAACACTCCAGGAGTTGAGGAGCATTGCCATTTCTTGAAGGAAGTAGAAGATGCCCAGAAGATTAGAAGAACAGTTATTGATTGCTTTGAGAGAGCAAGCTTGCCAAATGTAAGTGATGAAGAGAAGAAGAGGATTCTTCATTTTGCAATAGTTGGAGGTGGCCCAACCGGGGTGGAGTTTGCAGCCTCCCTTCATGACTTTGTCAATAAGGATTTGGTCAAGTTATATCCTGGGATCAAAGATTTAGTTAAGATCACGCTTCTGGAGGCTGGAGATCATATTCTGAGCATGTTTGACAAGAGAATTACTGCATTTGCTGAAGACAAGTTCAAGAGAGATGGCATTGAATTGAAAACAGGATCCATGGTTGTGAAGGTGTCAGAGAAAGAAATTTCTACCAAGGAACTGAAAAATGGAGGAGAGATTACTACAATTCCATATGGAATGGCTGTGTGGTCAACTGGTATAGGCACTCGTCCATTTATCAAAGATTTCATGAAGCAAATTAACCAGGCTAACAGGCGTGCCTTGGCTACTGATGAATGGTTGAGAGTTGAAGGGTGTGACAATGTTTATGCTCTTGGTGATTGTGCTACCATCAACCAGCGAAAAGTCATGGAAGATATTGCCGCGATTTTTAAGAAGGCAGATAAAGGCAACTCAGGAACGCTTACGGTGAAAGAATTTCAAGAGGTGATTGACGATATCTGTGAAAGGTACCCTCAGGTGGAGCTATATCTGAAGAGCAAGCAGATGCGCAGCATTGTTGATCTGTTGAAGGAAGCTAAGGGAGATGTTAAGAAAGAATCAACTGAACTGAACATCCAAGACTTCAAAGCAGCACTGTCCAAAGTGGATTCCCAGATGAAATTCCTTCCGGCGACAGCACAGGTTGCATCTCAGCAAGGCGCATACTTGGCCAAGTGTTTTAACCGCATGGAGGAGTGCGAAAAGAATCCAGAGGGTCCTCTTAGGTTCAGAGGAGAAGGTCGCCACCGCTTCAAACCCTTTAGGTACAAGCATTTTGGACAATTTGCTCCCCTGGGAGGAGAGCAGACAGCAGCACAGCTTCCTGGGGATTGGGTATCAATTGGCCACAGTTCCCAATGGTTATGGTATTCTGTCTATGCAAGCAAGCAAGTGAGCTGGCGTACGAGGGCCTTGGTGGTGTCAGACTGGGCGAGATGCTTTGTCTACGGTAGGGACTCGAGTCGCATCTGA 1767 0.446 MRGFTFYQRVSKAFLESSSLSKFLVLFTVSGGTGALVAYAEANGSNNGAYIGSSSSETVPEKKKVVVLGTGWAGTSFLRNLNNPRYEVLVVSPRNYFAFTPLLPSVTSGTIEARSIVEPIRNIFRKKRMDIEYSEAECLKIDSENRKIYCRSNINNNLNGKQEFVVDYDYLIIAVGANVNTFNTPGVEEHCHFLKEVEDAQKIRRTVIDCFERASLPNVSDEEKKRILHFAIVGGGPTGVEFAASLHDFVNKDLVKLYPGIKDLVKITLLEAGDHILSMFDKRITAFAEDKFKRDGIELKTGSMVVKVSEKEISTKELKNGGEITTIPYGMAVWSTGIGTRPFIKDFMKQINQANRRALATDEWLRVEGCDNVYALGDCATINQRKVMEDIAAIFKKADKGNSGTLTVKEFQEVIDDICERYPQVELYLKSKQMRSIVDLLKEAKGDVKKESTELNIQDFKAALSKVDSQMKFLPATAQVASQQGAYLAKCFNRMEECEKNPEGPLRFRGEGRHRFKPFRYKHFGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWARCFVYGRDSSRI 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1839 588 Gene3D - 54 425 - -
Lele16g1839 588 Gene3D - 429 587 - -
Lele16g1839 588 ProSiteProfiles EF-hand calcium-binding domain profile. 386 421 IPR002048 GO:0005509
Lele16g1839 588 PRINTS FAD-dependent pyridine nucleotide reductase signature 229 247 - -
Lele16g1839 588 PRINTS FAD-dependent pyridine nucleotide reductase signature 65 84 - -
Lele16g1839 588 PRINTS FAD-dependent pyridine nucleotide reductase signature 168 186 - -
Lele16g1839 588 Pfam Pyridine nucleotide-disulphide oxidoreductase 63 388 IPR023753 GO:0016491
Lele16g1839 588 SUPERFAMILY EF-hand 344 475 IPR011992 -
Lele16g1839 588 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 432 587 - -
Lele16g1839 588 SUPERFAMILY FAD/NAD(P)-binding domain 229 383 IPR036188 -
Lele16g1839 588 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 53 415 - -
Lele16g1839 588 PANTHER NADH DEHYDROGENASE 56 588 IPR045024 GO:0003954|GO:0006116
Lele16g1839 588 SUPERFAMILY FAD/NAD(P)-binding domain 62 281 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1839 Lele-ChrLele16 10959567 10962726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1839 1 588 EF-hand Containing Proteins AT4G05020 69.475 0.0 873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0673 13 18826808 18829822 Lele16g1839 16 10959567 10962726 hybridization
Lele14g0573 14 17243887 17247012 Lele16g1839 16 10959567 10962726 hybridization