Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1825 ATGGCCACTGTTGGGTCTTCTTCCTCGTCAAAGGTCTGCTACAATTCCGACTGCAAAGAATTGAAGTCAGACAGACCTAAGAAGGGTTGGAGACTCCGTACTGGAGACTTCGCCGAGCTCTGTGATCGATGCGGGTTTCCTGAGCAGAGAAAGGTAGCAGAGAGGATTTGAGGGGTGAATGGTAGGAACAACGAGGCATATCCATTGAAATCCCAGGATAAGCCCTATTTGACTGTGACTACGCATATAAGAAAAAGGGAAGGTTCTGTGAAATTTATCACTCAAAAGCTTCTGGTTGGAGGACTTGTGAGACATGTGGGAAGGGGATTCATTGCGGGTGTATTGTCTCAAGTACAGCCTTTATGTTCACCTGTTTCTCTTCAAGCTCGTTTTAGAGAGATGACCGAGAAAAATTGGAGTCAGTTAGCTGGATCAGGTCCTGTGCCGTGGAAGCAAGCACCCACTCTGTTCAATACAACTTCTTCATCTGACCGGCACCCAGATGTGCCATCTGTAGTTGAAATATCTAGTGTTGACAACATTTATGGAAATGAAAGGATAGCTGCCTCATCTCTGGAAAAGAAAAGTGATGATCTTTCTGGAATACCGGCTAATTGGAACGTAAAGATTGGCACGCGGGGAATGATGTTTATAAATGGAATGCGGAATGATGAAAAGTCTAGTTCATGCTTGAATATGTGCCAGCAACCTTCCCTTAAGGAGGATTCATCAACCCCACCATTTGGTTTGACTGTACCATATGCACATCATCATGAAAGAAATGGTCAGGTTGGGGTAACTGGAAGTCATCCACAACCAACTCCACCTCCTCTTGGAAAGCAATTTAATGGCCCTGTACATGTTTCACTTGATTCATCAGGTGAATCACAGGCACGAAATGGACGGCCTAGAGTAGATGCCCGAGGAAGGAACCAGTTACTGCCACGTTACTGGCCCAGCTCTAATTCAGTTATAACTCCATTGTTCCAAAAAACGTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAAAAATGTGCTGAGGCCTACTTTCCACCAATTTCCCAGCCTGAAGGTTTGCCACTTAAAATCCTCGATGCCAAAGGCAAGGAATGGATATTTCAATTTCGCTTTTGGCCCAACAATAACAGTAGAATGTATGTTTTAGAAGGCGTAACTCCATGCATACAGTCCATGCAATTGCAAGCTGGTGATACAGTAACATTTAGTCGGTTGGAGCCAGAGGGGAGGTTGGTTATGGGATTTCGAAAGGCTTCAAGTTCTACCCAGTCTGATCAGGTTGAATTGGATCCTAGCTCATGGTCTAAAGTTGACAAATCAGGATATATAGCAAAAGAAGCCCTGGGGAGCAAATCTTCCGTTTCTAGGAAGAGAAAGAGTAGCGCTTTGGGTTCAAAGAGTAAGCGACTAAGAATTGAAAATGAGGATCTAATAGAGTTGAATATTACATGGGAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAACCATGTTCCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAGTATGAGATTTGGGGATCTTCATGTGTTGTAGAGGCCCTTATGCTGGCATTGTTGTTACAGGATGCTCCAGTGCTAGGGAAACCAACAATTTTCACTACGGACAGTGTTGGATCATGTTCGGCTGCACAGGAGTTGACAGCAGAACAGCTTGAAGATTTGCTTCCCCCTTGTAATCCAGATGCATCCAAGAAAATGAAGACCGCCAAGCAGGATCCTGATAATGTCGAAGCTTTGGAAGGACTTGACACTCTTGCTAACTTAGCTATCTTGGGAGAGGGGGAGGCTCTCCCAGCATCTGCCCAAGCCACAACAAAACACCCTCGGCATAGACCTGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCTAGTGGGAAGGGGCCCAAGCATAAGCAGACTTGCACATGTAATGTTTGCTTAACAGTGAAGCGCCGTTTCCGTACCTTGATGTTACGGCGTGAGAAGAAACAATCAGAGAGAGAAGCGGAGACGACACGTAAAAAGCAGCAGCCCCTGCCACCTCAGCCGCCACCACCTATGTCGGAGATATTGCTTGATGATTCTTCCCTGCCTTGCAGTAACACAGGAGATAGTAGTAGTCCTAATCAGAACAGGGAGGGCAATGAAGCTTCTGATGATGACCCTAACAAAACAAAGTCATCCGCATCGCCATTTAAAGGCCAGATTGACCTCAATATTCAGCCAGAGCGAGAGGAAGAGTTGTCTCCCAGTTCAGATTCTGGAAGTATGATTAAGATGCTCCATAATGCTACTGAGAGGTATCTGAGGCAGCAGAGTATGGTGAACTCTTTCGCCGGAGATACCACAGGTGGACAGTCGCAGGAAGTTGGAGACGACGCGATGGAAGAGAAACTCTGCAATGATGTAGCCCTTGGCAGTAGTAATCATAATTCTGACAAGGAACATGCCCAAACATTGTCTATGAACTTACTGAACAGACGAGGTGAACAGGCAATATATATATATTCTTGCGAGATGAGGAAAGCTGTGGTGCGTTTGGGGATGTTATTGCCTTATGGGTGTTTTGGGAGTCTTGTCCTTGTCCATTGA 2634 0.4586 MATVGSSSSSKVCYNSDCKELKSDRPKKGWRLRTGDFAELCDRCGFPEQRKVAERIXGVNGRNNEAYPLKSQDKPYLTVTTHIRKREGSVKFITQKLLVGGLVRHVGRGFIAGVLSQVQPLCSPVSLQARFREMTEKNWSQLAGSGPVPWKQAPTLFNTTSSSDRHPDVPSVVEISSVDNIYGNERIAASSLEKKSDDLSGIPANWNVKIGTRGMMFINGMRNDEKSSSCLNMCQQPSLKEDSSTPPFGLTVPYAHHHERNGQVGVTGSHPQPTPPPLGKQFNGPVHVSLDSSGESQARNGRPRVDARGRNQLLPRYWPSSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSSTQSDQVELDPSSWSKVDKSGYIAKEALGSKSSVSRKRKSSALGSKSKRLRIENEDLIELNITWEEAQGLLRPPPNHVPSIVVIEGFEFEEYEIWGSSCVVEALMLALLLQDAPVLGKPTIFTTDSVGSCSAAQELTAEQLEDLLPPCNPDASKKMKTAKQDPDNVEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQPLPPQPPPPMSEILLDDSSLPCSNTGDSSSPNQNREGNEASDDDPNKTKSSASPFKGQIDLNIQPEREEELSPSSDSGSMIKMLHNATERYLRQQSMVNSFAGDTTGGQSQEVGDDAMEEKLCNDVALGSSNHNSDKEHAQTLSMNLLNRRGEQAIYIYSCEMRKAVVRLGMLLPYGCFGSLVLVH 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1825 877 FunFam B3 domain-containing transcription repressor VAL1 307 434 - -
Lele16g1825 877 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 126 798 - -
Lele16g1825 877 MobiDBLite consensus disorder prediction 708 727 - -
Lele16g1825 877 Gene3D - 311 433 IPR015300 -
Lele16g1825 877 SUPERFAMILY DNA-binding pseudobarrel domain 326 429 IPR015300 -
Lele16g1825 877 SMART B3_2 329 430 IPR003340 GO:0003677
Lele16g1825 877 MobiDBLite consensus disorder prediction 671 770 - -
Lele16g1825 877 MobiDBLite consensus disorder prediction 236 310 - -
Lele16g1825 877 Pfam B3 DNA binding domain 329 428 IPR003340 GO:0003677
Lele16g1825 877 ProSiteProfiles B3 DNA-binding domain profile. 329 430 IPR003340 GO:0003677
Lele16g1825 877 MobiDBLite consensus disorder prediction 673 688 - -
Lele16g1825 877 CDD B3_DNA 327 428 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1825 Lele-ChrLele16 10826679 10837868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1825 283 677 B3 DNA Binding Superfamily AT4G32010 47.854 8.79e-126 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele16g1825 B3 9.6e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1825 16 10826679 10837868 Lele13g0671 13 18803658 18805400 CCT
Lele16g1825 16 10826679 10837868 Lele14g0570 14 17220597 17222342 CCT
Lele16g1825 16 10826679 10837868 Lele15g1813 15 11035205 11036944 CCT
Lele16g1825 16 10826679 10837868 Lele16g1842 16 10981457 10983430 CCT
Lele16g1825 16 10826679 10837868 Lele16g1825 16 10826679 10837868 ECH
Lele13g0689 13 18953127 18968110 Lele16g1825 16 10826679 10837868 hybridization
Lele14g0588 14 17359667 17369268 Lele16g1825 16 10826679 10837868 hybridization