Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1824 ATGAACGATCTAATCTCAGGGTCCTTCAAGAAGTACACAGACCTGAAGCAACAGGTTTACCTGGACGATGTGGAAGCAGGGAAGGAAAGTGTAAACCTGGACAAGTTCTTCGAGGATGTGGAGAATGTGAAGGAGGACATGAGATCTGTGGAGAAACTGTACAGGAAATTGCAGGATGCCAATGAAGAGAGCAAGGTTGTTCACAATTCCAAGACCATGAAGGATCTTCGTGCCAGAATGGACAAGGACGTTGAACAGGTCCTCAAGCGGGTCAAGATCATAAAGGGCAAGCTTGAGGCTCTAGAGAGGTCCAATGCCGCCCAGAGAAACGTTCCCGGCTGTGGCCCCGGTTCGTCGGCTGACCGGACCAGAACCTCCGTGGTCAGCGGGTTGGGGAAGAAGCTCAAGGACTTGATGGATGACTTTCAGGGTCTCAGAGCTAGGATGCAAGCTGAATACAAGGAAACAGTTGAACGCAGGTATTTCACAATCACAGGAGAGAAAGCAGATGAAGATACCATAGAGAACTTGATAGCAAGTGGGGAGAGTGAAAGCTTCTTGCAGAGGGCCATTCAAGAACAAGGGAGGGGTCAGATAATGGACACCATATCAGAGATTCAAGAGAGGCATGATGCAGTGAAGGAGATAGAGAAGAATTTGATTGAGCTGCACCAGGTGTTCTTGGACATGGCGGCTCTGGTGGAGGCTCAGGGCCAGCAGCTGAACAACATAGAGAACCACGTGGCGCATGCTAGTTCGTTCGTGAGGCGAGGTACCGAGCACCTTCAGGAGGCAAGAGAGCACCAGAAGGAGTCCAGGAAGTGGACCTGCATTGCCATACTTCTTGGACTTGTCCTCATCATTTTGCTCTTGTTCCCCATCTTGCTTCAACTTATGCCTCACTTGTTGATGTAG 915 0.4995 MNDLISGSFKKYTDLKQQVYLDDVEAGKESVNLDKFFEDVENVKEDMRSVEKLYRKLQDANEESKVVHNSKTMKDLRARMDKDVEQVLKRVKIIKGKLEALERSNAAQRNVPGCGPGSSADRTRTSVVSGLGKKLKDLMDDFQGLRARMQAEYKETVERRYFTITGEKADEDTIENLIASGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVEAQGQQLNNIENHVAHASSFVRRGTEHLQEAREHQKESRKWTCIAILLGLVLIILLLFPILLQLMPHLLM 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1824 304 CDD SNARE_syntaxin1-like 202 264 - -
Lele16g1824 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele16g1824 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Lele16g1824 304 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Lele16g1824 304 CDD SynN 33 190 IPR006011 GO:0016020
Lele16g1824 304 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Lele16g1824 304 Pfam SNARE domain 240 291 IPR000727 -
Lele16g1824 304 PANTHER SYNTAXIN 41 285 IPR045242 -
Lele16g1824 304 SMART tSNARE_6 198 265 IPR000727 -
Lele16g1824 304 Gene3D - 33 160 - -
Lele16g1824 304 Coils Coil 84 104 - -
Lele16g1824 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Lele16g1824 304 SMART SynN_4 28 154 IPR006011 GO:0016020
Lele16g1824 304 Gene3D - 195 296 - -
Lele16g1824 304 Coils Coil 33 63 - -
Lele16g1824 304 FunFam Syntaxin 132 196 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1824 Lele-ChrLele16 10821975 10822977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1824 1 304 SNARE and Associated Proteins AT1G61290 77.961 1.34e-179 496