Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1812 ATGGCTGGTCGCTACGACAGTAACCCCTTCGATGAAGAAGAGGTCAATCCCTTCTCTGACCCAGCAGTAAGGGGTAAGTCATCAAACCAGTCAAACTATGGTGGGGGTGCATTTTACACAACTAATCCTGGAAGCGTTGCCCCTGCCACAAATTCAAGGCTTGCACCTCTTAATCCAGAACCTGCTGATTATGGCTTTGGCACAACAATTGATATACCTCTTGATAATTCATCAACGGATATAAAAAAGAAGGAGAAGGAACTCCAAGCCAAGGAGGCTGAATTGAAAAGGAGGGAGCAGGAAGTAAGACGTAGAGAGGAAGCTGCTGCTCGAGGTTTGGTGCTGTGCCTTTTATGGAATATCATAGCTGTCACTGCAGCTTGGATTAAGGGCGAAGGTGTAAAAATCTGGTTTCTTGCTCTCATCTACTTCATAGCAGGGGTTCCCGGAGCCTATGTCCTGTGGTATCGGCCATTATATCGTGCTTTCAGGTCTGAAGGTGCTATGAAGTTTGCATGGTTTTTTCTGTTCTACGCGATTCACATTGTATTTTGCATATTTGCTGCAGTTGCTCCTCCTATTGTCTTCAAAGGAAAATCCCTCACAGGCATTCTGCCTGCAATAGATGTGCTGGGCAACCATGTTTTGATTGGGAATGTTGACCCTAACAACTGGTTTGTTGTGTACACAGCAAGTGCTTATGTACTTCCGTGGGAGTGGAAAGGCTGCTGA 732 0.4577 MAGRYDSNPFDEEEVNPFSDPAVRGKSSNQSNYGGGAFYTTNPGSVAPATNSRLAPLNPEPADYGFGTTIDIPLDNSSTDIKKKEKELQAKEAELKRREQEVRRREEAAARGLVLCLLWNIIAVTAAWIKGEGVKIWFLALIYFIAGVPGAYVLWYRPLYRAFRSEGAMKFAWFFLFYAIHIVFCIFAAVAPPIVFKGKSLTGILPAIDVLGNHVLIGNVDPNNWFVVYTASAYVLPWEWKGC 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1812 243 Pfam SCAMP family 110 218 IPR007273 GO:0015031|GO:0016020
Lele16g1812 243 Coils Coil 74 108 - -
Lele16g1812 243 MobiDBLite consensus disorder prediction 1 54 - -
Lele16g1812 243 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 7 107 IPR007273 GO:0015031|GO:0016020
Lele16g1812 243 MobiDBLite consensus disorder prediction 22 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1812 Lele-ChrLele16 10727656 10733485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1812 1 218 Miscellaneous Gene Families AT1G61250 55.939 3.60e-93 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1812 16 10727656 10733485 Lele14g0601 14 17484312 17486554 CCT
Lele16g1812 16 10727656 10733485 Lele16g1810 16 10707624 10709850 CCT
Lele13g0708 13 19116098 19116400 Lele16g1812 16 10727656 10733485 CCT
Lele15g1774 15 10699215 10699523 Lele16g1812 16 10727656 10733485 CCT
Lele16g1806 16 10666382 10666690 Lele16g1812 16 10727656 10733485 CCT
Lele13g0702 13 19046785 19052286 Lele16g1812 16 10727656 10733485 hybridization
Lele14g0599 14 17463365 17469346 Lele16g1812 16 10727656 10733485 hybridization