Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1803 ATGGCGGACGAGGGGTTCTATTACTCGGAACTGGTTGACGGAGATGCTGATGCTGATGATAAGTTGTTTATCGATCTTGTCACCTTTATGAATGTCCTTGATGAGGATTGTGATCCTTCGGAGAGTAGTCTGGAGGGTTTTTCGTTAAAAAATGTCTCACCTGGCGAATCCAGCATCCATGATAATTTTCAGCTTCAAAGTGGAAATTCTGCACTTTGCTGTGATCATGAAAATCGTGGACCTTCTTCACAGACTTGCTCTTCCTCTCATGCCGTCCCTGACGGTTTTCAGCAGTTGGATCCTCATGATAGAAGTAATGAAATTTGCTACACAGAAAGGGAAGGAACTTCAGGATGTGAGATGCCAGCCCAATCTTTGGAACCTAGTGTCCGTGAGCCACATTTCAACAATATATCGGTTTGTGGGGATAATTTGAGTTTGAATCCTCTCTGGAAGGACAAAAATGAGAGCCAACTCAAGCATGTGGGAGAGGATGTTAAATCTGAATATGCTTCATACAGCCCCATCATTGAGAATGGTGATGTAAGTTTTGCACAATATAGAGCTTTTGATGAAGATATGTGTGAAGGCGCTTCTGGACTGGAAACGGACTCGTGTACATCTTTTGAAATATCATTTATGGATGCTAATGGAGGTTCACATATTGCAACATCAACCAATTCTACTATTTGCCAAGGCTCCAATGCTCTTAGTGATTCTTTTGACTACTTTTCATCCTTGCATGGTTATAAGGGTACAGATGATAGATTTCTAACTTCTGACTTGTCTCTTGCTTATTTGCCTAATGTTTTTGGCTCTCAATTTTGGCCAAATCAAGAAATACTTGATAATGTGAAGGGTGAAAACTTGGAGTATGTGGCTGATGCCTCACATGTGAGTAGTAACATGCATTCCAGTTCTACTGGTGGGATTCCTTTTCAAGATAATCAATTTATATCAGCAGATAGTGAATTTTCTTCATTTTTTCCTGGTAATGCTTCATACTTTCCCTGTGAATACCAAGTAGTTTGTGTCAAAGGTGAAAGAGATGAATCGATTGCACCTTACCAGAACTCTCTTTATGAAAATTACTCTAATGGAGGCCAAGAGATGAATCAATTAAATGGAGGCCTAGAGATGAATCAGTTAAATAGTTCTATTCCTTCCATGGGAAATCATAGTTTTAATTCGTTAGAGTGTGAGGATAAAGATGCTGATATATTATCCAACATACATCATCATTATCAAGAGATGATTGATGGTACTAGCTGTAAATTTCCAAGAGACACAGCTAATTTGAATAGACAAGCCTTAGACAAATCTTTGCCCTACGCCAAGGCCTCAATTGGCACTGAGGAGCAGTTTGGTTATGTTAAGAAGGAAGGGGAGGGAAAAATGATTGAATGTAGGAATTTTGATTCTCAATTCTTGAAAGCTGGCACTGAATTGGTTCACAGAAGTTTTTCAGAGAAATCCCATGTTGAGGATGATGACTCTGATGTCTGTGTGATTGAAAGCATTAGTCATCCTGCACCAACCAATAGATCAACAGACCATCAGAATTCCCATAAGATACCACAGTACTCTTCATATGGTGATTCACAACCTTACATGTCACGAAGCACAAGGCCGAAGGCCTGTGATGAGCAATATGTATTGCGAGTTGCCCTGCAGGATTTATCTCAGCCAAAGTCAGAAGTTATACCTCCAGATGGGTTGATGGCTGTTCCTCTATTAAGACATCAGAGAATTGCTTTGTCATGGATGGTTCAAAAGGAAACATCAAGTTTATACTGCTCAGGGGGAATCCTTGCAGATGATCAGGGACTTGGAAAAACAGTGTCAACTATTGCTTTGATACTGAAGGAAAGACCTCCAACACTAATAGCTTCCACCAATGCACAAAAGGGTGAATTAGAACCTTTGAATCTGGATATCGATGATGATGTTCTTGCTGAGGGTGGTGGAGTGAAGGAAGATAAGCCTAGTGTAAGTCTGATTGAAAACAAGGATTTGTCAATGCAAACAAAGGGAAGGCCATCTGCAGGAACACTTGTTGTTTGTCCCACTAGTGTCCTACGGCAATGGGCTGAAGAGTTGCAAAATAAGGTAACCAGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAGTCGAACAAAAGATCCGTATATGCTGACCAAGTATGATGTTGTTTTGACGACTTATTCAATTGTCAGCATGGAGGTACCTAAGCAGCCTCTGGTTGACAAAGATGATGAAGAGAAAGGAAATTCTGAAGTTAATGCTGGTCTACCGCCTAGTAAGAAAAGGAAATGGCCTCCTTCTAGTAGAAGTGGCAAGAAGGGATTAGACCATGCTTTGCTTGAGGCTTCTGCTCGCCCTTTAGCAAAGGTGGCATGGTTTAGAGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATTACAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGAGCGAAGCGAAGATGGTGCTTGTCTGGGACTCCTATACAGAATGCTATTGATGATCTTTATAGTTATTTTAGATTTCTCAGATATGACCCTTATGCTGTTTATAATACGTTCTGTTCTTCTATTAAGATTCCAATAAACAAAAATCCGAACAAAGGGTATAGAAAGCTACAAGCTATCTTAAAGACAATAATGTTACGCCGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATTACACTGCCACCTAAATATGTGAAGCTGAAAAAAGTGGATTTTTCAAGAGAGGAGCGTGATTTCTATTCCAAACTGGAGGCTGATTCTCGTGCACAGTTTCAGGAATATGCCAAGGCTGGAACTGTCAAGGAAAATTATGTCAACATTCTGTTAATGCTTTTACGCCTTCGACAAGCTTGTGATCATCCTCTCCTTGTTAAGCGCTACAATTCTAACTCTCTATGGAGATCTTCAGTTGAGATGGCAAAGAAACTTCCTTGCGAAAAACGAACATCACTTCTGAAATGTTTAGAGGCTTCCTTGGCTCTTTGTGGCATCTGTAATGATCCTCCTGAAGATGCAGTTGTTTCAGCTTGTGGTCATTATAGGAGGCTTGATGGCACAATGTCAGTTGTTGCTAGGGATAAAGCTGTTAAAGATTTTAATAATCTCCCAGAGGTAACAGTTATGATCATGTCTTTGAAAGCTGCAAGTCTTGGCCTCAACATGGTAGCTGCCTGCCATGTACTTATGCTTGATCTATGGTGGAATCCAACAACAGAAGATCAAGCAATTGACAGAGCGCATCGAATTGGGCAGACTCGCCCTGTAACAGTTTTACGGCTGACTGTGAGAGATACGGTTGAAGATCGTATTTTAGCTCTACAGCAAAAGAAGCGGAAGATGGTTGCATCTGCGTTTGGGGAAGATGAAACTGGCGGTCGTCAAAGTCGCCTCACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3474 0.4105 MADEGFYYSELVDGDADADDKLFIDLVTFMNVLDEDCDPSESSLEGFSLKNVSPGESSIHDNFQLQSGNSALCCDHENRGPSSQTCSSSHAVPDGFQQLDPHDRSNEICYTEREGTSGCEMPAQSLEPSVREPHFNNISVCGDNLSLNPLWKDKNESQLKHVGEDVKSEYASYSPIIENGDVSFAQYRAFDEDMCEGASGLETDSCTSFEISFMDANGGSHIATSTNSTICQGSNALSDSFDYFSSLHGYKGTDDRFLTSDLSLAYLPNVFGSQFWPNQEILDNVKGENLEYVADASHVSSNMHSSSTGGIPFQDNQFISADSEFSSFFPGNASYFPCEYQVVCVKGERDESIAPYQNSLYENYSNGGQEMNQLNGGLEMNQLNSSIPSMGNHSFNSLECEDKDADILSNIHHHYQEMIDGTSCKFPRDTANLNRQALDKSLPYAKASIGTEEQFGYVKKEGEGKMIECRNFDSQFLKAGTELVHRSFSEKSHVEDDDSDVCVIESISHPAPTNRSTDHQNSHKIPQYSSYGDSQPYMSRSTRPKACDEQYVLRVALQDLSQPKSEVIPPDGLMAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPTLIASTNAQKGELEPLNLDIDDDVLAEGGGVKEDKPSVSLIENKDLSMQTKGRPSAGTLVVCPTSVLRQWAEELQNKVTSKANLSVLVYHGSSRTKDPYMLTKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGNSEVNAGLPPSKKRKWPPSSRSGKKGLDHALLEASARPLAKVAWFRVVLDEAQSIKNYRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYNTFCSSIKIPINKNPNKGYRKLQAILKTIMLRRTKGTLLDGEPIITLPPKYVKLKKVDFSREERDFYSKLEADSRAQFQEYAKAGTVKENYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPCEKRTSLLKCLEASLALCGICNDPPEDAVVSACGHYRRLDGTMSVVARDKAVKDFNNLPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDETGGRQSRLTVDDLKYLFMM 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1803 1157 Gene3D - 663 753 IPR038718 -
Lele16g1803 1157 Gene3D - 910 1156 IPR027417 -
Lele16g1803 1157 SMART helicmild6 1020 1099 IPR001650 -
Lele16g1803 1157 SMART ultradead3 574 874 IPR014001 -
Lele16g1803 1157 Gene3D - 785 907 IPR038718 -
Lele16g1803 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 895 IPR027417 -
Lele16g1803 1157 Pfam Helicase conserved C-terminal domain 1029 1099 IPR001650 -
Lele16g1803 1157 CDD DEXDc_SHPRH-like 578 895 - -
Lele16g1803 1157 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 668 753 - -
Lele16g1803 1157 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 777 907 - -
Lele16g1803 1157 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 593 857 IPR014001 -
Lele16g1803 1157 MobiDBLite consensus disorder prediction 83 104 - -
Lele16g1803 1157 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 959 1152 IPR001650 -
Lele16g1803 1157 Gene3D - 547 643 IPR038718 -
Lele16g1803 1157 MobiDBLite consensus disorder prediction 748 782 - -
Lele16g1803 1157 MobiDBLite consensus disorder prediction 509 541 - -
Lele16g1803 1157 CDD SF2_C_SNF 998 1109 - -
Lele16g1803 1157 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 454 1029 - -
Lele16g1803 1157 Pfam SNF2-related domain 598 972 IPR000330 GO:0005524|GO:0140658
Lele16g1803 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 903 1156 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1803 Lele-ChrLele16 10640970 10649345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1803 985 1156 RAD5 or RAD16-like Gene Family AT1G61140 73.034 6.68e-69 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele16g1803 SNF2_N 1.9e-69 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0706 13 19096834 19097718 Lele16g1803 16 10640970 10649345 CCT
Lele14g0603 14 17506180 17507046 Lele16g1803 16 10640970 10649345 CCT
Lele15g1776 15 10717805 10718683 Lele16g1803 16 10640970 10649345 CCT
Lele16g1808 16 10684273 10685139 Lele16g1803 16 10640970 10649345 CCT
Lele16g1803 16 10640970 10649345 Lele14g0601 14 17484312 17486554 CCT
Lele16g1803 16 10640970 10649345 Lele16g1810 16 10707624 10709850 CCT
Lele13g0711 13 19129846 19140050 Lele16g1803 16 10640970 10649345 hybridization
Lele14g0608 14 17539934 17547284 Lele16g1803 16 10640970 10649345 hybridization