Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1800 ATGGATATTCTATTAGAAGTGAAATTTTTCTGCACATTGGCTATTGTTCTTGGGCTATTATGTGCGAAGCCTATTGCATCTTCGAGACACAACAGGCGATATCAACCTGGGAGAAAAATGAGTTCTGAAGATAATAACGAGGATCTTGTAACCAGCTTGCCTGGTCAGCCTCATGCAGATTTCCAGCACTTTGCTGGCTATGTCACAGTGAACGAAACTAATGGAAGAGCTCTCTTTTACTGGTTTTACGAGGCCATCACCAAACCTCAAGAGAAACCCTTAGTGCTTTGGCTTAATGGAGGACCTGGGTGCTCTTCTGTAGGATATGGAGCGACGCAGGAGATTGGCCCATTTTTAGTGGACACTGACGGTCAGGGTCTTAAATATAATAACTTCTCATGGAACAGAGAAGCCAACGTTTTATTCGTGGAATCTCCTGTGGGTGTTGGCTTTTCCTACTCCAACACGACCAGTGATTATGAACACCTTGGAGATGACTTCACAGCTAATGATGCTTACAATTTTCTGCACAAGTGGTTTCTCAAGTTTCCATCTTACAGAACTAGGAAATTTTACATTGCAGGAGAGAGTTATGCAGGAAAGTATGTACCTGAGCTTGCTGAGCTCATCGTTGATAGGAACAAGGACCCTTCGCTTCATATTGATCTTAAGGGCATCCTGCTGGGGAATCCAGAAACATCTGATGCTGAGGATTGGGTGGGTATTGTGGATTATGCTTGGAGCCACGCGGTGATATCAGATGAAACACACAGAGAAATCAGAGAAAGTTGTGACTTCAAAAGCAGTAACCCGTGGATTAACCAAACTTGTTGTGATGCTGTGGATGAATTGCTTGCACAGTACCACAAGATTGATATGTATAGCCTCTATACCCCTGTCTGCTTTGCCACTGCTGCACGTTCCAATAATGATCAATCTACGAAAACCGTCATGAGTTATAAGCGCACGTTGAAAATGATGCCTAGGATCATGGGAGGTTTCGATCCATGTTTGGATGATTATGCCACAGCTTTCTATAACAGACCAGATGTTCAGAAGGCTCTTCATGCCAGCGACGGTTATAGCCTTAAGAATTGGAGTATTTGCAACTACAACATATTCCACCACTGGAAAGATTCAAAGCCATCTGTTGTCCCAATTTACAAGAAGCTTATTTCTGCAGGACTTAGAATCTGGGTTTACAGTGGAGACACAGATGGAAGAGTGCCAGTACTGTCCACAAGATACAGCTTAAGTACTCTGAATCTGCGCATCACCAAGCCATGGAGACCATGGTATCACGAGAACGAGGTAAGTGGGTGGTTTCAAGAATACGAGGGGCTTACTTTTGCAACATTTCGAGGAGCTGGACATGATGTGCCTAGTTTCAAACCAAGCAATTCACTCTTATTCTTCTCCTCCTTTCTTCTCGGACAGTCCCCTCCAGAAACTATATAA 1458 0.4362 MDILLEVKFFCTLAIVLGLLCAKPIASSRHNRRYQPGRKMSSEDNNEDLVTSLPGQPHADFQHFAGYVTVNETNGRALFYWFYEAITKPQEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGQGLKYNNFSWNREANVLFVESPVGVGFSYSNTTSDYEHLGDDFTANDAYNFLHKWFLKFPSYRTRKFYIAGESYAGKYVPELAELIVDRNKDPSLHIDLKGILLGNPETSDAEDWVGIVDYAWSHAVISDETHREIRESCDFKSSNPWINQTCCDAVDELLAQYHKIDMYSLYTPVCFATAARSNNDQSTKTVMSYKRTLKMMPRIMGGFDPCLDDYATAFYNRPDVQKALHASDGYSLKNWSICNYNIFHHWKDSKPSVVPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSTLNLRITKPWRPWYHENEVSGWFQEYEGLTFATFRGAGHDVPSFKPSNSLLFFSSFLLGQSPPETI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1800 485 Gene3D - 337 373 - -
Lele16g1800 485 FunFam Carboxypeptidase 335 480 - -
Lele16g1800 485 FunFam Carboxypeptidase 384 478 - -
Lele16g1800 485 SUPERFAMILY alpha/beta-Hydrolases 45 480 IPR029058 -
Lele16g1800 485 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 49 465 IPR001563 GO:0004185|GO:0006508
Lele16g1800 485 ProSitePatterns Serine carboxypeptidases, serine active site. 193 200 IPR018202 GO:0004185
Lele16g1800 485 FunFam Carboxypeptidase 44 303 - -
Lele16g1800 485 Pfam Serine carboxypeptidase 57 476 IPR001563 GO:0004185|GO:0006508
Lele16g1800 485 Gene3D alpha/beta hydrolase 44 303 IPR029058 -
Lele16g1800 485 Gene3D - 384 478 - -
Lele16g1800 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 143 153 IPR001563 GO:0004185|GO:0006508
Lele16g1800 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 179 204 IPR001563 GO:0004185|GO:0006508
Lele16g1800 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 142 IPR001563 GO:0004185|GO:0006508
Lele16g1800 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 448 461 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1800 Lele-ChrLele16 10611974 10614758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1800 342 479 Calmodulin-binding Proteins AT2G22960 35.252 2.37e-18 81.3