Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1785 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGTAGTGGGATTGACTGGAACCAGACGTTGCTGAAAGATCAGAAGTTGGAGCTACCGAAGCCTCCTCCATTGATGAGGAAACTGCAAGAACAACAACAACAGAATCAGCAGCAACAGATGCAGCAACAACGACAGCAATCATCGTCGTCGGAGCCTTTGAAGTGTCCGAGGTGTGATTCGATCAACACCAAGTTCTGTTACTATAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGAACCTGCAAGAGGCACTGGACTAAAGGTGGCACCTTGCGCAATGTCCCTGTTGGCGGTGGCCGGAAAAACAAACGGGTCAAGAAATCATCATCCACCCCCATCTCTTCCTCCCCCGCCGCCGCGACCTCCGGCATGACAATTCATAGTTCCCTGCAAAGGCCGAGTAATAATCTTCCTCTTCCTCCATCATCCTCTGCCTCTCTCTTTCAGTCTCTGATTCATCTTCCTCCATCACAATCCTCCTTGCTTCTTCCTCATCAGAATCTGATTAACACCAGAGACTCATCACAAAGTAAAGATTTTGGAATTGGGACCACCACCAACTTCTTGACTTCGACGACAACTCTGCCTCTTCTTCCTCATCAAAATCAGAGCTTTATCTTCCCTTTCTCAAGCTCGAGCTCTTTTGAGACTAACCCATGTTCTGTTTCAACCTCTCTGAGATCCTCAAGTGTTTACAATAATAATAACAACTACGGCCAAGAGTTGAAGACAACAATGGAAGAGCCAACCCCAACAACACAGACACAGACACAGCCATGGGAGATACCTTCGACAAGCGTAGGAGGCAATACGGAAATGTCAAACTACTGGACTTGGGAGGACCTCGATTCGTTGGTCTCAACTGATCTCAATGTTCCCTGGGATGATTCTGATCTAAAACCCTGA 939 0.4707 MGLSSKQVSSSGIDWNQTLLKDQKLELPKPPPLMRKLQEQQQQNQQQQMQQQRQQSSSSEPLKCPRCDSINTKFCYYNNYNKSQPRHFCRTCKRHWTKGGTLRNVPVGGGRKNKRVKKSSSTPISSSPAAATSGMTIHSSLQRPSNNLPLPPSSSASLFQSLIHLPPSQSSLLLPHQNLINTRDSSQSKDFGIGTTTNFLTSTTTLPLLPHQNQSFIFPFSSSSSFETNPCSVSTSLRSSSVYNNNNNYGQELKTTMEEPTPTTQTQTQPWEIPSTSVGGNTEMSNYWTWEDLDSLVSTDLNVPWDDSDLKP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1785 312 MobiDBLite consensus disorder prediction 119 133 - -
Lele16g1785 312 MobiDBLite consensus disorder prediction 100 133 - -
Lele16g1785 312 MobiDBLite consensus disorder prediction 21 64 - -
Lele16g1785 312 Pfam Dof domain, zinc finger 61 114 IPR003851 GO:0003677|GO:0006355
Lele16g1785 312 Coils Coil 34 57 - -
Lele16g1785 312 MobiDBLite consensus disorder prediction 258 279 - -
Lele16g1785 312 MobiDBLite consensus disorder prediction 36 64 - -
Lele16g1785 312 ProSiteProfiles Zinc finger Dof-type profile. 62 116 IPR003851 GO:0003677|GO:0006355
Lele16g1785 312 ProSitePatterns Zinc finger Dof-type signature. 64 100 IPR003851 GO:0003677|GO:0006355
Lele16g1785 312 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 41 258 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1785 Lele-ChrLele16 10501485 10502423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1785 62 192 C2C2-Dof Transcription Factor Family AT5G60200 46.269 8.28e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele16g1785 zf-Dof 2.2e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0637 14 17774222 17785923 Lele16g1785 16 10501485 10502423 CCT
Lele15g1734 15 10387597 10399732 Lele16g1785 16 10501485 10502423 CCT
Lele16g1772 16 10395349 10409105 Lele16g1785 16 10501485 10502423 CCT
Lele13g0730 13 19279132 19283319 Lele16g1785 16 10501485 10502423 hybridization
Lele14g0626 14 17684163 17692340 Lele16g1785 16 10501485 10502423 hybridization