Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1769 ATGAATAGAGGAGGTCGGGGGGGGGGTGATGGCGTACAGAATGGAAGGAGGAATGGGGTTGATTGTTCGATAAATGGCGACTCTAGCTCCGAACAACTTGTTCTCTGCATCCTCATATCCTTCTCCTTCTTCTTCACCTTCAACTTCAACGAAACACCTCCCCATCCCCTTTTTTCCAATCTCGAAGAAGCCTATTCATTCACGTGCTATTCTGATCTCCAGCTCCAGCTCCACCTCCAATCCAAGCGGACCAAGCCCAAAACCAGCACAAGCATCTTCCGCTGCTGTCCCCACCACCACCACCACCACCGACTCGGAAGCTTTCGTTTCCCGATTTACCCTGATGAGCCCAGGAAAGGCGCTGATATCCTCGTTGAAGCTCTTGAGCGCCAAGGCGTTACCGATGTCTTCGCCTACCCCGGCGGTGCTTCAATGGAGATCCGTCAAGCGCTCACGCGCTCCAATATCATCCGTAGCGTTCTTCCGCGCCATGAGCAAGGCGGTGTTTTCGCCGCCGAGGGATACGCGCGCTCATCCGGCCTTCCTGGCGTCTGCATCGCCACGTCGGGTCCCGGCGCCACCAATCTGGTCAGTGGTCTTGCCGATGCGCTGCTTGATAGCGTACCTCTGGTCTCCATAACAGGGCAAGTCCCTCGAAGGATGATCGGTACTGATGCGTTCCAGGAGACGCCCATTGTTGAGGTAACAAGATCAATTACTAAGCATAATTATCTTGTTCTTGATGTAGACGATATTCCTAGGATTGTGAAAGAGGCGTTCTTCTTAGCTACTTCGGGGAGACCAGGCCCAATATTAATCGACGTGCCAAAAGATATACAGCAACAGCTTGCGATTCCTAACTGGGACCAACCGAGTAAGCTGCCGGGATACACGGCGAGGCTTCCCAAGTCGCCGGATTGGAACCTGTTAGAGCAGATTGTGAGGTTGATATTGGACTCCAAGAAGCCAGTTCCGTATGTTGGCGGTGGATTGTACGCTAATTATGCCATCGATAAAAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGGGTGACAGGAAAGCTTGAAGCCTTTGCTAGTCGAGCTAAAATCGTTCATGTAGACATTGATTCAGCTGAGATTGGAATAAAAAATAAAGTTGATTTTCAAGCTTGGAGAGAAGAGCTGAGCGAGCAAAAACTCAAATTCCCTTTAAGTTACAAGACATTTGAGCAAGCCATTTCTCCTCAGTATGCCATTCAGGTATTGGATGAACTGACAAATGCATCAGGGGGTCTTGGGACTATGGGTTTTGAATTGCCTGCTGCAATTGGGGCTGCTGTGGCTAACCCAAACACTCTTGTTGTGGACATTGATGGTGATGGAAGTTTCATAATGAATGTTCAGGAACTTGCCACTATTAAGGTGGAGAATCTCCCTATTAAGATACTGTTGCTGAATAATCAACACTTGGGTATGGTTGTTCAGTGGGAAGATAGGTTTTATAAATCTAACAGAGCTCACACATATCTGGGAAACCCATCTAAGGAGACTGAGATCTTCCCAAATATGTTGAAGTTTGCTGAAGCTTGTGGCATACCAGCAGCTCGAGTGATCAAGAAAGAGGACCTTAGAGTAGCAATTCAGAAAATGTTGGATACTCCTGGTCCCTATCTTCTAGATGTTATAGTTCCCCATCACGAGCATGTCTTGCCCATGATTCCAAATTCGAGAGCTATAATGTCTGACGCTGAAAATCAAACCTCTTTGAAAAATGGCGATCTTCTTTGGTCAAAGCCTGACAGGGCCTACCGCAAGAAGCTTAGTGGTACTATTTCGTGTATGAAAACTGTCAATGATTTAACTATAGAAAGGTTACGCTGGCCCAATTTTCATGGATCTGATCATGAGAGGCTAAGGGTGAGAAAGCGAGATGGAGATAGGAAAACTTATCATGCACACCATCACAAGGACTCTGAAAATGGAGGCTTTAGAAGAAAAAACAGTTATGACAATTATAATCGTCATCAGAACTGTGATTATGACAGGCATCGAGGTCATGTTCAAGATGGAGAAATTAGGCACAGATATGGAAGACAATCAAGTTACAGATCCAAGAGGGAATCTAGATCTCGCTCCAGATCCCCACCTCATTCAGAAAGCAAAAGGATAAGTGGTTTTGACATGGCACCGTCATCTGTTGCTGGAGCACCTGCTGCTGCGGGTTTGTACCTAATCTTGTATGATATATTTTCTTTTGGCTTCATTTTTGATAGTGCAGGGCAAATGTTGGGGACCACTCATCCAGTAACTCTGCAGAATGTGCCATCAATTGGGATGTCACAGGTTGGAGCTCTTTCCTTGTTGTCAGTTCAACCTATGATGCAGCAGGCCACAAGGCATGCACGACGAGTTTATGTTGGTGGGCTTCCCCCTTTTACTAATGAGCAGGCAGTTGCAGCATTCTTCAGTGATGTTATGGTAGCTATTGGAGGGAATTCTGCTGGTGCAGGTGATTCTGTTGTCAATGTATACATTAATCATGAGAAGAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGCAATGCAATGGCATTAGATGGAATCATATTTGAGGGAGTTGCTGTGCGGGTTCGCAGGCCTACAGACTATAATCCTTCAGTAGCTGCTGCTCTAGGTCCGAGCCAACCAAGTCCAAACCTTAACTTAGCTGCTGTTGGGCTTGTTGCAGGTGCAATTGGCGGAACTGAGGGACCTGATCGCATCTTTGTTGGTGGGCTACCATACTGCTTTACTGAAGAACAAATAAAAGAATTGCTCCAAGCTTTTGGACCTCTCAGAGCATTCGATCTAGTTAGAGATAAAGACACTGGAAATTCTAAAGGATATGGTTTCTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCTCTGAATGGCCTGAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCCATGGTCTGTGTACATCCTAAAACAGAACAGGAGAATTTCTTTGCACAGGCACAACAGCATATTGCTATTCAGAGAATAGCCATGGAAGCTGGTGGGCTAAATATTCCAGGAGTGGAAAGAGCATCAATCAATCATAATGAAAATGCTACCAAAGTTTTGTGCTTGACTGAGGTAAACTTGCTTTCTGCTTCAAAGTTAATTGATTTTAATTTAATGCTATGCTTGGTTTTCTTGAAAAAGGCCATTACTGCTGATCAACTAAGGGATGATGAAGAGTATGGAGAAATATTGGAAGACATGCGGGATGAATGCCGCAAATTTGGGACCTTGATAAATGTTGTTATCCCGCGTCCAAATGGCATTGGCGAGGCTTCCCCAGGTGTTGGAAAGGTGTTCTTAGAATATTCTGATAGTAGTGGAACTCTCCATCGGCATTTTCTAACATCATTCTCCGTTTTCACTGCCTACTTTCATTCCTTCGTTTCTTTGCTTTGCTATTTGATTCTCTCTTTCATTCTGGTGTATTCTTTTTTTTGGTAA 3525 0.4533 MNRGGRGGGDGVQNGRRNGVDCSINGDSSSEQLVLCILISFSFFFTFNFNETPPHPLFSNLEEAYSFTCYSDLQLQLHLQSKRTKPKTSTSIFRCCPHHHHHHRLGSFRFPIYPDEPRKGADILVEALERQGVTDVFAYPGGASMEIRQALTRSNIIRSVLPRHEQGGVFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALLDSVPLVSITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVKEAFFLATSGRPGPILIDVPKDIQQQLAIPNWDQPSKLPGYTARLPKSPDWNLLEQIVRLILDSKKPVPYVGGGLYANYAIDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHVDIDSAEIGIKNKVDFQAWREELSEQKLKFPLSYKTFEQAISPQYAIQVLDELTNASGGLGTMGFELPAAIGAAVANPNTLVVDIDGDGSFIMNVQELATIKVENLPIKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGNPSKETEIFPNMLKFAEACGIPAARVIKKEDLRVAIQKMLDTPGPYLLDVIVPHHEHVLPMIPNSRAIMSDAENQTSLKNGDLLWSKPDRAYRKKLSGTISCMKTVNDLTIERLRWPNFHGSDHERLRVRKRDGDRKTYHAHHHKDSENGGFRRKNSYDNYNRHQNCDYDRHRGHVQDGEIRHRYGRQSSYRSKRESRSRSRSPPHSESKRISGFDMAPSSVAGAPAAAGLYLILYDIFSFGFIFDSAGQMLGTTHPVTLQNVPSIGMSQVGALSLLSVQPMMQQATRHARRVYVGGLPPFTNEQAVAAFFSDVMVAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSVAAALGPSQPSPNLNLAAVGLVAGAIGGTEGPDRIFVGGLPYCFTEEQIKELLQAFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRAMVCVHPKTEQENFFAQAQQHIAIQRIAMEAGGLNIPGVERASINHNENATKVLCLTEVNLLSASKLIDFNLMLCLVFLKKAITADQLRDDEEYGEILEDMRDECRKFGTLINVVIPRPNGIGEASPGVGKVFLEYSDSSGTLHRHFLTSFSVFTAYFHSFVSLLCYLILSFILVYSFFW 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1769 1174 Gene3D - 794 895 IPR012677 -
Lele16g1769 1174 SMART rrm1_1 920 993 IPR000504 GO:0003723
Lele16g1769 1174 SMART rrm1_1 800 878 IPR000504 GO:0003723
Lele16g1769 1174 SUPERFAMILY RNA-binding domain, RBD 799 884 IPR035979 GO:0003676
Lele16g1769 1174 CDD TPP_PYR_POX_like 122 277 - -
Lele16g1769 1174 Gene3D - 425 559 - -
Lele16g1769 1174 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 117 331 IPR045229 -
Lele16g1769 1174 SUPERFAMILY RNA-binding domain, RBD 920 1117 IPR035979 GO:0003676
Lele16g1769 1174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 921 990 IPR000504 GO:0003723
Lele16g1769 1174 ProSitePatterns Thiamine pyrophosphate enzymes signature. 440 459 IPR000399 GO:0000287|GO:0030976
Lele16g1769 1174 Gene3D - 329 424 - -
Lele16g1769 1174 Gene3D - 1068 1138 IPR012677 -
Lele16g1769 1174 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 410 574 IPR029061 -
Lele16g1769 1174 FunFam U2 snRNP auxiliary factor large subunit 896 1008 - -
Lele16g1769 1174 MobiDBLite consensus disorder prediction 635 725 - -
Lele16g1769 1174 Gene3D - 919 997 IPR012677 -
Lele16g1769 1174 SUPERFAMILY DHS-like NAD/FAD-binding domain 305 398 IPR029035 -
Lele16g1769 1174 Pfam Thiamine pyrophosphate enzyme, central domain 329 387 IPR012000 GO:0000287|GO:0030976
Lele16g1769 1174 CDD RRM3_U2AF65 1073 1138 - -
Lele16g1769 1174 FunFam Acetolactate synthase 115 296 - -
Lele16g1769 1174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 919 997 IPR000504 GO:0003723
Lele16g1769 1174 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 111 295 IPR029061 -
Lele16g1769 1174 CDD TPP_AHAS 410 571 IPR039368 GO:0030976
Lele16g1769 1174 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 422 558 IPR011766 GO:0003824|GO:0030976
Lele16g1769 1174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 799 882 IPR000504 GO:0003723
Lele16g1769 1174 CDD RRM1_U2AF65 798 880 - -
Lele16g1769 1174 MobiDBLite consensus disorder prediction 635 717 - -
Lele16g1769 1174 Gene3D - 111 301 - -
Lele16g1769 1174 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 119 282 IPR012001 GO:0030976
Lele16g1769 1174 CDD RRM2_U2AF65 919 995 - -
Lele16g1769 1174 FunFam U2 snRNP auxiliary factor large subunit 794 895 - -
Lele16g1769 1174 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 632 1053 IPR006529 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1769 Lele-ChrLele16 10367158 10386260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1769 921 995 Eukaryotic Initiation Factors Gene Family AT1G71770 28.000 3.96e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0748 13 19419246 19421249 Lele16g1769 16 10367158 10386260 hybridization
Lele14g0640 14 17796835 17798826 Lele16g1769 16 10367158 10386260 hybridization