Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1767 ATGTACATAGCTTCCATGCGAAAGTCTTTCAAGGACTCCTTGAAAGTGCTTGAAGCTGATATCCAGCATGCCAATACCCTGCCGTGTGATCGTCAGTACCTACTGGATCGTGAATATACCATCCACCCCATGACTTCTCATACTCTTGTGGCTTGGGCATCGGATTTTCCCAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTTTTAGTGCAATGGACGGACTGTAATCTTGCAGGAGCCCTTGGGCTTCTAAGAATCCTAATTTACAAGGTTTACGTGGATGGCACAACCACCATGTCTACGCATGAAAGAAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCATCTTTATTGCAACTTCAGAAAGGTGTCACTGATACGGAGGATAAAAAACAAAAGGCTGTATGCATGGAGCGGTATCGAAGGAGAGATGATGAGGAACATAGGCAATTTTCAGATGTTCACATTGAAAGAGATGAAGAATGTGGTATATGCATGGAGATGAATAGTATGGTTGTGTTGCCCAACTGCAACCATGCAATGTGCTTGAAATGCTACCGTGAATGGTGCCTCTATCTCTCTCTTTCTCTCTGTGTTGTGTGGGGTGGCATTCTTTATCTTTTCTCAGTCATGACATCAAGAAATGAGAATTATGGTGCAAGTAAAATGCCCTTTTCCCCCTTTCCTGAAGAGACCTTGGGCGATGACTTGCCACGTTTTCAGAAATTTGAGTTTTCTAATGCTTGA 789 0.4309 MYIASMRKSFKDSLKVLEADIQHANTLPCDRQYLLDREYTIHPMTSHTLVAWASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCMERYRRRDDEEHRQFSDVHIERDEECGICMEMNSMVVLPNCNHAMCLKCYREWCLYLSLSLCVVWGGILYLFSVMTSRNENYGASKMPFSPFPEETLGDDLPRFQKFEFSNA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1767 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 212 IPR013083 -
Lele16g1767 262 PANTHER RING FINGER PROTEIN 41, 151 8 203 - -
Lele16g1767 262 ProSitePatterns Zinc finger RING-type signature. 191 200 IPR017907 -
Lele16g1767 262 SUPERFAMILY RING/U-box 163 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1767 Lele-ChrLele16 10341994 10344460 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0637 14 17774222 17785923 Lele16g1767 16 10341994 10344460 CCT
Lele15g1734 15 10387597 10399732 Lele16g1767 16 10341994 10344460 CCT
Lele16g1772 16 10395349 10409105 Lele16g1767 16 10341994 10344460 CCT
Lele13g0751 13 19445701 19449109 Lele16g1767 16 10341994 10344460 hybridization
Lele14g0642 14 17815686 17819302 Lele16g1767 16 10341994 10344460 hybridization