Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1760 ATGGAATCGAAGCTATTTCGCAGAATCGCGATGCAAAGTACGACCGCGAGCAGATTCTACTACACGATTAGGACTAGGAAGCCGAGTCTCTATGCTAAAATCAGTCCACTTGGGAGCCCCAGCGCCAGCGTGGTACCTGTGCTCGAGGATTGGGTCTATAAGGGGAACAAGATCAGCGTTGGCGAGCTTCAGCGCATCGTTCGAGATCTTCGCAAGCGCCGGAGGTTCACACAAGCCCTAGAGGTATCTGAGTGGATGAATAAGAATGGTGTATGCATATTTTCATCCTCTGAGCATGCTGTGCATTTGGATCTGATGGGCAAAGTTCATGGATATCCTTCTGCTGAAAGCTACTTTAATAGCTTGAAGGAAGAAGATAAAAATAATAAGACATATGGTGCTCTCTTGAATTGCTATACACGGCAGTACCAAATTGAGAAGGCCCTCTCCCATCTGCAGAAAATGAAGGAGTTTGGGTTTGCTTCATCACTAAGTTACAATGATATTATGTGTCTATACACCAACATTGGTCATGTTGAGAAGGTCCCTGGTGTACTGATCGAGATGAAAAAGAACAAAGTTTTGCCTGACAACTTCTCCTACAGAATCTGTATCAATGCTTTTGGTGTGAGGTCTGATATTGATGGAATTGAGAGAACACTAAAAGAGATGGAAAACCAATCTCACATTGTGATGGACTGGAACACTTATGCTGTCGTGGCTGATTTCTATATAAAAGCAGGACTTACGAGTAAGGCAGTTGATGCCCTAAAGAAAGCAGAGGAGAGGCTAGATAAGAAGGATGGTCTTGGTTACAATTTTCTTATTTCTCTTTATGCTCGTCTTGGAGACAAGACCGAGGTCAGCAGATTATGGGAACGGGAGAAGAGTGATTGCAAGAGGTGCATAAACAGAGATTTCACCACCATGTTAGAATCTCTTGTAAGGCTTGGTGAGCTGGATGAAGCTGAGAAAATATTGAAGGAGTGGGAGTCCTCTGGCAATTGTTATGATCCTCGCATCCCAGATGTTGTCATCAATGGATACTCAAAAAAAGGTTTGCACGAGAAAGCGGAAATCATGCTGAAAAGCTTACAAAAGAGGGGGAAGGCGACCATGTCAAACAGGTGGACTGAAGTGGCAGCTGGATACCTTCGTAAGGGTGAGATGGAGAAAGCATATGATTGCTTTAAAGCAGCCCTACGGGCGGAAAATAAAGAATGGAAGCCGAATCCCAGGGTGTTCTCGGGCATAGTTAGTTGGCTTGGTGATAACGGAAGTGTTGAAGAAGTAGAAGCTTTGGTGGGTTCATTGAGAAATTTTGTCCCGGTAAACAAGCGAATGTACCACGCCCTCATCAAGGCTTATACGAGACATGGAAAAGAAGTAGATGGGCTTTTGGATGGTATGAAGAAAGATAAAATTGATGAAGATGAAAAAACGAAAGAAATTCTTGATATGAGTAAGCCTTAG 1473 0.4358 MESKLFRRIAMQSTTASRFYYTIRTRKPSLYAKISPLGSPSASVVPVLEDWVYKGNKISVGELQRIVRDLRKRRRFTQALEVSEWMNKNGVCIFSSSEHAVHLDLMGKVHGYPSAESYFNSLKEEDKNNKTYGALLNCYTRQYQIEKALSHLQKMKEFGFASSLSYNDIMCLYTNIGHVEKVPGVLIEMKKNKVLPDNFSYRICINAFGVRSDIDGIERTLKEMENQSHIVMDWNTYAVVADFYIKAGLTSKAVDALKKAEERLDKKDGLGYNFLISLYARLGDKTEVSRLWEREKSDCKRCINRDFTTMLESLVRLGELDEAEKILKEWESSGNCYDPRIPDVVINGYSKKGLHEKAEIMLKSLQKRGKATMSNRWTEVAAGYLRKGEMEKAYDCFKAALRAENKEWKPNPRVFSGIVSWLGDNGSVEEVEALVGSLRNFVPVNKRMYHALIKAYTRHGKEVDGLLDGMKKDKIDEDEKTKEILDMSKP 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1760 490 Pfam PPR repeat 307 334 IPR002885 -
Lele16g1760 490 Pfam PPR repeat 344 369 IPR002885 -
Lele16g1760 490 Pfam PPR repeat 131 160 IPR002885 -
Lele16g1760 490 PANTHER OS12G0527900 PROTEIN 26 477 - -
Lele16g1760 490 Gene3D Tetratricopeptide repeat domain 298 370 IPR011990 GO:0005515
Lele16g1760 490 Gene3D Tetratricopeptide repeat domain 53 164 IPR011990 GO:0005515
Lele16g1760 490 Gene3D Tetratricopeptide repeat domain 165 297 IPR011990 GO:0005515
Lele16g1760 490 Gene3D Tetratricopeptide repeat domain 371 487 IPR011990 GO:0005515
Lele16g1760 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Lele16g1760 490 SUPERFAMILY TPR-like 127 436 IPR011990 GO:0005515
Lele16g1760 490 TIGRFAM PPR: pentatricopeptide repeat domain 307 337 IPR002885 -
Lele16g1760 490 TIGRFAM PPR: pentatricopeptide repeat domain 131 160 IPR002885 -
Lele16g1760 490 Pfam PPR repeat family 163 208 IPR002885 -
Lele16g1760 490 ProSiteProfiles TPR repeat profile. 374 407 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1760 Lele-ChrLele16 10303011 10305158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1760 29 473 EF-hand Containing Proteins AT1G02150 34.868 5.97e-87 275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1760 16 10303011 10305158 Lele16g1760 16 10303011 10305158 ECH
Lele15g1721 15 10294014 10299108 Lele16g1760 16 10303011 10305158 ECH
Lele13g0762 13 19507514 19514046 Lele16g1760 16 10303011 10305158 hybridization
Lele14g0649 14 17848808 17850967 Lele16g1760 16 10303011 10305158 hybridization