Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1758 ATGGCCTTTGAGCACTATGTTTCCCAGGAATGGAAAAACATTCCAAGTTCCATGACGACAGAGACCGGAAACTACGACCGTTGTTTTGATTGCAACATCTGCTTTGACTTTGCTCTTGAACCTGTGGTCACCCTCTGTGGCCACCTCTATTGCTGGCCCTGCATCTACAAGTGGCTCCACGTCCAAAGCGCTTCTCTCGCATCCGATGAGCGCCCGCGATGCCCGGTCTGCAGAGCTGATATATGTCCCACCACCTTGGTACCCCTATATGGCCGGGGCCAAACCCCGGCTCCTTCCGAGCAGGACAAAAAGGCATCGTGTCGCGATAAATCTATACCGCCAAGACCACGAGCTTTTGGCGCCCAAGCTCTGATGTCAGCACCATCATCATCATCTCAAGGTGGTCATCATCAGCAGCAGCAGCATGTTCCTTATCATCATCACAGTCATCAACAAGTGCTCAATCTAAGCACCACTCTTACACCTCAAGGATTTCACCATCCTGTGGCTGGGATGGTTTATGCCAGAGTGTTTGGCAACCCGGAAAATTTATACGCCTACCCGAATTCTTATCAGCAGATGGGCAGTAACAGCCCGAGACTGCGAAGGCAGGTGATGCAAGCAGATAAATCATTGAACAGAATCTCAATCTTCCTCTTCTGCTGTTTTGTTTTGTGTCTCATCGTCTTCTGA 693 0.5007 MAFEHYVSQEWKNIPSSMTTETGNYDRCFDCNICFDFALEPVVTLCGHLYCWPCIYKWLHVQSASLASDERPRCPVCRADICPTTLVPLYGRGQTPAPSEQDKKASCRDKSIPPRPRAFGAQALMSAPSSSSQGGHHQQQQHVPYHHHSHQQVLNLSTTLTPQGFHHPVAGMVYARVFGNPENLYAYPNSYQQMGSNSPRLRRQVMQADKSLNRISIFLFCCFVLCLIVF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1758 230 SUPERFAMILY RING/U-box 26 90 - -
Lele16g1758 230 CDD RING-HC_AtRMA_like 29 79 - -
Lele16g1758 230 Pfam Zinc finger, C3HC4 type (RING finger) 31 77 IPR018957 GO:0046872
Lele16g1758 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 91 IPR013083 -
Lele16g1758 230 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Lele16g1758 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele16g1758 230 MobiDBLite consensus disorder prediction 92 148 - -
Lele16g1758 230 MobiDBLite consensus disorder prediction 124 148 - -
Lele16g1758 230 ProSiteProfiles Zinc finger RING-type profile. 31 78 IPR001841 -
Lele16g1758 230 SMART ring_2 31 77 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1758 Lele-ChrLele16 10291183 10291875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1758 6 216 C3H Transcription Factor Family AT4G27470 39.381 4.29e-44 146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1758 16 10291183 10291875 Lele16g1758 16 10291183 10291875 ECH
Lele13g0763 13 19518404 19519099 Lele16g1758 16 10291183 10291875 hybridization
Lele14g0651 14 17861430 17862122 Lele16g1758 16 10291183 10291875 hybridization