Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1749 ATGGCGAGTCTGTTCGGGTCCGCTCAGACATCCATGATCGTCACGAACACGCCGTCGCAGGACCTCGCTCTTTCCAATCTCGCCTTCTGCTCACCCTCTGATCTTCAGAACTTCGCTGTCCCGGGCTTCAAAAACGTCTTCCTCGCTCTGCGTCGGTGTGCCAAAGTTTCTGCCGCTGAGTCGATACCTGTGCGCAGATTCGTTCCACCCGACAATTTCAACCTGGCAATGTTAACCCTTGAGTTGGACTTCATCAAAAAGGGAAGTAAAAGTGAACAGATTGATGCAGTTCAGCTGGGTAAGCAGCTCAAAAAGAGATTTGTAAACCAGGTTATGACTGCGGGGCAGAAAGTGCTGTTTGAGTATCATGGAAATAATTATAGTTTCACAGTCAGTCAAGCTGTTGTTGAGGGTCAAGATAAATCTAATTCTCTTGAAAGAGGGATGCTAATGGATGACACATATGTTGTATTTGAAACATCACGTGATAGTGGAATAAAGATTGTCAATCAGCGTGAGGCTGCCACAAGCAACATTTTTAAGCAGAAAGAATTCAATCTTCAGTCATTGGGTATTGGGGGTTTGAGTGCAGAATTTGCAGATATATTTCGTAGAGCTTTTGCATCTCGTGTTTTCCCTCCCCATGTGACTTCTAAACTAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGACCTCCAGGGACTGGAAAAACTCTCATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAAGAACCAAAGATTGTAAATGGTCCCGAAGTCTTGAGTAAATTTGTTGGTGAAACTGAGAAGAATGTAAGGGACCTCTTTGCTGATGCTGAAAGGGATCAGAAGACTCTAGGGGATGAAAGTGAATTGCATGTCATAATTTTTGATGAAATTGATGCTATTTGCAAGTCAAGAGGTTCAACTCGAGATGGCACAGGAGTTCATGATAGTATTGTAAATCAACTTCTCACTAAGATAGATGGTGTGGAGTCGCTGAATAATGTTTTGCTTATTGGAATGACCAACAGAAAGGACATGCTGGATGAAGCTCTTATGAGACCGGGGCGATTGGAAGTCCAAGTTGAGATAAGCCTTCCTGACGAAAATGGCCGATTGCAGATTCTTCAAATTCATACTAACAAGATGAAGGACAATTCCTTTTTATCTCCCGATGTGAACCTTCAAGAGCTTGCTGCTCGAACCAAAAACTATAGTGGTGCAGAACTTGAAGGTGTTGTGAAGAGTGCAGTATCATTTGCTTTAAATAGACAACTTAGTCTAGATGATCTCACCAAACCAGTGGAGGAAGAGAATATCAAGGTTACAATGGACGATTTTTTGAACGCACTTCATGAAGTTGTTCCTGCATTTGGAGCTTCAACTGATGACCTTGAAAGATGCAGACTTGGTGGCATGGTGGATTGTGGTGATAGACATAAGCACATTTACCAAAGAGCTATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTTACTTGTCTTCTGGAAGGCCCTAGTGGCAGTGGTAAAACTGCACTTGCAGCTACTGTTGGCATTGATAGCGATTTCCCATATGTCAAGATTGTTTCAGCTGAATCAATGATTGGTCTCCATGAAAGCACTAAATGTGCACAGATTATCAAGGTTTTTGAGGATGCGTACAAGTCACCATTGAGCGTCATTATTCTTGATGACATTGAGAGATTGTTGGAGTATGTGGCCATTGGTCCACGGTTTTCAAATTTGATTTCTCAGACACTACTGGTCCTGCTAAAACGGCTTCCTCCAAAGGGGAAAAAGCTCCTGGTTATTGGTACAACAAGTCAACTGATTTTCTTGGACACAATTGGATTTTGTGATACTTTCTCTGTCAATTACCACGTTCCTACATTGAACACAAATGATGTCAAGAAGGTTCTAAAACAGTTGAATGTCTTTGCTGAGGGTGATGTTGATGATGCTGCGGAGGCCTTGAATGATATGCCTATCAAGAAGCTATACACGTTGATTGAGATGGCAGCCCAAGGAGAACATGGGGGATCTGCAGAAGCAATATTTTCTGGCAAAGAGAAGATTCAGCTATCTCACTTCTATGATTGCCTTCAGGATGTTGTCCGAGTATGA 2148 0.426 MASLFGSAQTSMIVTNTPSQDLALSNLAFCSPSDLQNFAVPGFKNVFLALRRCAKVSAAESIPVRRFVPPDNFNLAMLTLELDFIKKGSKSEQIDAVQLGKQLKKRFVNQVMTAGQKVLFEYHGNNYSFTVSQAVVEGQDKSNSLERGMLMDDTYVVFETSRDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAERDQKTLGDESELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALMRPGRLEVQVEISLPDENGRLQILQIHTNKMKDNSFLSPDVNLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKPVEEENIKVTMDDFLNALHEVVPAFGASTDDLERCRLGGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATVGIDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLLVIGTTSQLIFLDTIGFCDTFSVNYHVPTLNTNDVKKVLKQLNVFAEGDVDDAAEALNDMPIKKLYTLIEMAAQGEHGGSAEAIFSGKEKIQLSHFYDCLQDVVRV 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1749 715 CDD AAA 498 616 - -
Lele16g1749 715 Pfam AAA+ lid domain 395 450 IPR041569 -
Lele16g1749 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 468 679 IPR027417 -
Lele16g1749 715 Gene3D - 70 168 - -
Lele16g1749 715 FunFam Vesicle-fusing ATPase 370 457 - -
Lele16g1749 715 Pfam ATPase family associated with various cellular activities (AAA) 509 617 IPR003959 GO:0005524|GO:0016887
Lele16g1749 715 Pfam ATPase family associated with various cellular activities (AAA) 228 368 IPR003959 GO:0005524|GO:0016887
Lele16g1749 715 ProSitePatterns AAA-protein family signature. 339 357 IPR003960 GO:0005524|GO:0016887
Lele16g1749 715 SUPERFAMILY ADC-like 11 71 IPR009010 -
Lele16g1749 715 PANTHER VESICULAR-FUSION PROTEIN NSF 10 714 IPR039812 GO:0016887|GO:0035494
Lele16g1749 715 FunFam Vesicle-fusing ATPase 71 168 - -
Lele16g1749 715 Gene3D - 177 369 IPR027417 -
Lele16g1749 715 SUPERFAMILY Cdc48 domain 2-like 70 173 IPR029067 -
Lele16g1749 715 FunFam vesicle-fusing ATPase isoform X1 466 637 - -
Lele16g1749 715 Pfam Cell division protein 48 (CDC48), domain 2 93 139 IPR004201 -
Lele16g1749 715 Gene3D - 467 637 IPR027417 -
Lele16g1749 715 SMART AAA_5 224 371 IPR003593 -
Lele16g1749 715 SMART AAA_5 504 625 IPR003593 -
Lele16g1749 715 CDD AAA 226 369 - -
Lele16g1749 715 FunFam Vesicular-fusion ATPase SEC18 180 370 - -
Lele16g1749 715 Gene3D - 370 457 - -
Lele16g1749 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 467 IPR027417 -
Lele16g1749 715 Gene3D - 8 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1749 Lele-ChrLele16 10218859 10233273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1749 129 443 Calmodulin-binding Proteins AT3G56690 30.599 2.73e-30 126