Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1742 ATGCCCTACATTCTCCAGATCATGGACAACATTCCAGCTTCTTCATCCACAGGCGACAGAAAATTCATAGAGAGGAACAGAAGAAGCCAGATGAGAACTCTTTGCTCTCAGCTCAGCTCACTCGTCCCTCGTCAATCCTCGAAGGGGGTGATTTCGCTTTCAGATCAGCTGGGTGAAGCCGCCAACTACATAAAGAAGCTTCAGATAAAGTTGGAGAAGATGAAGGAGAAGAAGCTCTGCCTAATGGGAATCAACAACAACGAGCCTAACATCACTGAGAGTCTAGGTTATAACGATAATAATAATAATAATAGAGAAATGATTATGGGTTCGAAATCGCCCAAAGTTGAGATTCACCAAATGGGTTCAACATTAGAGGTTTCTGTGATTACTGGGTTGGATTGCCAGTTCATTTTCAACGAGTTAATTCGCATCCTTCATGAAGAACAAGCCGATGTTGTAAATGCGAGTTATTCAGTTGTTCAAGATACTGTTTTACACACCATTCACTGTCAGATAGGAGATTGTGGTAATAGAGCTGGGAGGATATCGGAGAGAATAGAGAGGTTTTTGTATGGTTCTGGTGCATTTTGA 594 0.4192 MPYILQIMDNIPASSSTGDRKFIERNRRSQMRTLCSQLSSLVPRQSSKGVISLSDQLGEAANYIKKLQIKLEKMKEKKLCLMGINNNEPNITESLGYNDNNNNNREMIMGSKSPKVEIHQMGSTLEVSVITGLDCQFIFNELIRILHEEQADVVNASYSVVQDTVLHTIHCQIGDCGNRAGRISERIERFLYGSGAF 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1742 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 22 81 IPR036638 GO:0046983
Lele16g1742 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 15 67 IPR011598 GO:0046983
Lele16g1742 197 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 17 186 IPR015660 -
Lele16g1742 197 Pfam Helix-loop-helix DNA-binding domain 23 68 IPR011598 GO:0046983
Lele16g1742 197 SMART finulus 21 73 IPR011598 GO:0046983
Lele16g1742 197 Coils Coil 57 77 - -
Lele16g1742 197 Gene3D - 18 93 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1742 Lele-ChrLele16 10162318 10163370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1742 12 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.426 1.25e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele16g1742 HLH 2.3e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0777 13 19636179 19637011 Lele16g1742 16 10162318 10163370 hybridization
Lele14g0665 14 17966514 17974530 Lele16g1742 16 10162318 10163370 hybridization