Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1736 ATGGCTGCATCTTCTGCGGCTCTCAATTCCCTCTCTTCTCTCTCCCTTCCCTCTTCTCCCCGCTTCTCTCTCCTACCCATCACCAAATTCACATTCTCTCTCCTCCCCAAAACCCCACGACCATTTCTCTCTACTTTCTCGTCCCCCATCATCCCCAGACCCAAATCCAAGTCCTCCGATGACATCGACACCTCCTTCTTCGACAATGTAAGGCCAGAAGAGGACGTTGCTTTCAACCCCCCGGAACCTCCCGAAGGCTTCGTTCCCGTTCCTCCCGTCGATGACGGTCCCATGGAGACCGACGATGAAATCGCCGCCGCTTATGAGGAGCTTTATGGACCTGCATACAGTGGTGTCTCTGTTCTTGGCAACGATGTGTATGTAATGGACTCTAAGATGAAGAAAGATACTGGTTTCGGCTCCAAGGGGAAGAAAGAGAAGGTTAAGGATGGGTTTGAAGAAAGGGTAGTACAGGTCAGAAGGGTGACCAAGGTTGTAAAAGGAGGGAAGCAATTGCACTTCAGGGCAATTGTGGTTGTGGGTGACAAGAAAGGTCAAGTGGGCGTCGGAGTTGGGAAAGCCAAAGAGGTTATAGGAGCAGTTCAGAAATCTGCTGTAAATGCGAGGCGGAATATCATCACAGTGCCTATGACTAAGTACCTGACTTTCCCACATAGATCTGAGGGAGATTATGGAGCAGCAAAGGTGATGCTTAGACCAGCTTCACCTGGTACTGGAGTTATCGCAGGTGGATCTGTGAGAATTGTTCTAGAAATGGCAGGCGTTGAGAATGCTTTGGGAAAGCAACTAGGTGGCAATAATGCACTCAACAATGCCAGAGCAACAGTTGTTGCTGTGCAGAAAATGAGGCAGTTCCGCGAAGTTGCTGAGGAGCGAGGTATCCCAATGGAAGAACTATGGAAGTAA 927 0.4962 MAASSAALNSLSSLSLPSSPRFSLLPITKFTFSLLPKTPRPFLSTFSSPIIPRPKSKSSDDIDTSFFDNVRPEEDVAFNPPEPPEGFVPVPPVDDGPMETDDEIAAAYEELYGPAYSGVSVLGNDVYVMDSKMKKDTGFGSKGKKEKVKDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVIGAVQKSAVNARRNIITVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGGNNALNNARATVVAVQKMRQFREVAEERGIPMEELWK 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1736 308 FunFam 30S ribosomal protein S5 141 213 - -
Lele16g1736 308 ProSitePatterns Ribosomal protein S5 signature. 169 201 IPR018192 -
Lele16g1736 308 ProSiteProfiles S5 double stranded RNA-binding domain profile. 152 215 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele16g1736 308 TIGRFAM rpsE_bact: ribosomal protein uS5 150 305 IPR005712 GO:0003735|GO:0006412|GO:0015935
Lele16g1736 308 FunFam 30S ribosomal protein S5 217 308 - -
Lele16g1736 308 Gene3D - 219 307 IPR014721 -
Lele16g1736 308 MobiDBLite consensus disorder prediction 1 20 - -
Lele16g1736 308 Hamap 30S ribosomal protein S5 [rpsE]. 133 305 IPR005712 GO:0003735|GO:0006412|GO:0015935
Lele16g1736 308 SUPERFAMILY dsRNA-binding domain-like 149 217 - -
Lele16g1736 308 Pfam Ribosomal protein S5, N-terminal domain 152 216 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele16g1736 308 PANTHER RIBOSOMAL S SUBUNIT 142 307 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele16g1736 308 Pfam Ribosomal protein S5, C-terminal domain 229 299 IPR005324 GO:0003735|GO:0005840|GO:0006412
Lele16g1736 308 SUPERFAMILY Ribosomal protein S5 domain 2-like 222 300 IPR020568 -
Lele16g1736 308 Gene3D - 143 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1736 Lele-ChrLele16 10108778 10110565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1736 152 292 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 30.201 3.64e-14 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0781 13 19678984 19680759 Lele16g1736 16 10108778 10110565 hybridization
Lele14g0671 14 18028280 18030061 Lele16g1736 16 10108778 10110565 hybridization