Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1732 ATGGGGGAGAGTTCAAGTTTGGGATTCAAGGAATATGTGGCCGGTTTGCTCGCTGGGGTTGCGACTGTAGCTACGGGCCATCCCTTTGACACAGTGAAGGTGAAGCTGCAAAAACACAATACTGAAGCACATGGGATTCAATACAGGAGTGGTTTGCATTGCACTGCTAGGATACTGAAGACTGAGGGAATTAGAGGACTGTATAGTGGAGCAACATCATCTTTTATTGGGATGGCTTTTGAAAGCTCACTGCTTTTTGGCATTTATTCCCAGACAAAACTAGCCCTCCAGGGTGGTGTGCCAAGCAGTGTACCACAGCCTCATGTAATAATACCATCTGCAGCTTATGGAGGTGCAATAATCAGTTTTGTGTTGTGTCCATCGGAGCTGGTGAAGTGCAGGATGCAAATCCAAGGCACTGACTCTTTGGTTCCTACGTCCAGCAGATACAAGAGTCCTCTTGATTGTGCCCTAAGAACTGTAAAAACCGAAGGGGTGGCTGGAATCTTTCGTGGCGGTTATACAACATTGCTTAGAGAATCTATAGGAAATTCTGTATTTTTCAGTGTTTATGAATATGTGCGTTATCACATGCATTCACATATTAAAGCTGCCTCGTACAATTACACTAACTTGATTGATATGGGAATTGGGATCGTTTCTGGTGGCCTCAGTGGTGTAGCTTTTTGGTTGGCTGTTTTGCCCCTGGACGTGGCAAAAACCATTATTCAGACTAACCCGGATAAAAACTGTCCAAGGAATCCTTTTCAAGTCTTGAGTAATATTTACAGGAGGGCCGCATTAAACGGGCTTTACACGGGCTTGGGCCCCACAGTTGCTCGAGCATTTCCTGCTAATGCAGCAGCAATTGTCACCTGGGAGCTAGCAATGAAAATGTTAGGCATTAAACTTGACTAA 918 0.4488 MGESSSLGFKEYVAGLLAGVATVATGHPFDTVKVKLQKHNTEAHGIQYRSGLHCTARILKTEGIRGLYSGATSSFIGMAFESSLLFGIYSQTKLALQGGVPSSVPQPHVIIPSAAYGGAIISFVLCPSELVKCRMQIQGTDSLVPTSSRYKSPLDCALRTVKTEGVAGIFRGGYTTLLRESIGNSVFFSVYEYVRYHMHSHIKAASYNYTNLIDMGIGIVSGGLSGVAFWLAVLPLDVAKTIIQTNPDKNCPRNPFQVLSNIYRRAALNGLYTGLGPTVARAFPANAAAIVTWELAMKMLGIKLD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1732 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 299 IPR018108 -
Lele16g1732 305 FunFam Mitochondrial amino acid carrier 180 304 - -
Lele16g1732 305 Gene3D Mitochondrial carrier domain 2 111 IPR023395 -
Lele16g1732 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 105 197 IPR018108 -
Lele16g1732 305 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 6 300 - -
Lele16g1732 305 Gene3D Mitochondrial carrier domain 112 303 IPR023395 -
Lele16g1732 305 SUPERFAMILY Mitochondrial carrier 10 294 IPR023395 -
Lele16g1732 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 6 95 IPR018108 -
Lele16g1732 305 FunFam Mitochondrial carrier protein 2 109 - -
Lele16g1732 305 Pfam Mitochondrial carrier protein 219 300 IPR018108 -
Lele16g1732 305 Pfam Mitochondrial carrier protein 9 97 IPR018108 -
Lele16g1732 305 Pfam Mitochondrial carrier protein 113 198 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1732 Lele-ChrLele16 10069299 10074984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1732 25 300 Antiporters AT1G79900 29.893 1.77e-35 128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1732 16 10069299 10074984 Lele13g0788 13 19729397 19730209 CCT
Lele16g1732 16 10069299 10074984 Lele14g0677 14 18082646 18088632 CCT
Lele16g1732 16 10069299 10074984 Lele15g1696 15 10070064 10074132 CCT
Lele16g1732 16 10069299 10074984 Lele16g1731 16 10060395 10064437 CCT
Lele13g0786 13 19715073 19720179 Lele16g1732 16 10069299 10074984 hybridization
Lele14g0676 14 18071951 18077006 Lele16g1732 16 10069299 10074984 hybridization