Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1731 ATGCCAGCACAGAAGCGCTTGTTCGACGCACCAGAAGAGGGCGCTTTGCACGGCGAGAGTAACCACCATGAGAAGCCAGAAGATGGATTGGAATCCGATCGAAGCCCTTCGGAGAGCACCGGCGACAAAGAAGAGTTTGTTGTTATAAAATTGTCAGATATACGCAAGGAAGTTCAGTGTCCTATCTGCCTAGGCGTCATTCGAAAAACAAGAACTGTAATGGAATGCCTGCACCGCTTTTGCAGAGAGTGTATAGACAAATCCATGCGCCTCGGCAACAATGAGTGCCCTGCTTGCCGCACACATTGTGCTAGCCGACGCTCACTGAGAGATGACCCAAACTATGATGCTTTAATTGCTGCTCTCTATCCAGATATAGACAAGTATGAGCAGGAGGAATTGGCTCTGCATGAAGATGAAAAAGCTCGCAATAAGCAGATCCAAGAATCTATTGCTCAGATGCTTCAACGACAGGCAGAAGCCCTGGGTAAAAAACGCAATGCCAAAGCGATCACAAGGAGGTCACAAGGTAACTATCGAACTTCGCATGTGAGGGCAAGAAGAAATTGTAGAAGTGCGATTGAACTTCAGGGATCTGATGACACTGAGGACATGAATGATGATGATGGGGCCAAGGGTTCTTCTTCTGGTGATGAGCTGATAGAAATCAGGTCAAAAAGATTTAAAAGAGGGGCAGGAGCACAATTTCCTCCGCATTCTGCAACCACTGTTGCAGATGGTGCCAGTGATGAAAATGCTCCTGAAGTGAGTAGAGAATTCTTGAGTCCTTCTAGTACACTTGCCTGGGGAAAAAATGGTCACCGGAGCCACACCCGAGTCAATGGCAAGAATGCCAGAAATAGTCGCCTTGCCAAATTGATTGATAATCTCCGTAGCTTGGAAGAAAACGATGATGAGTTTGGTGTCTGCCTCATGCTTGTGCCTTTTGATGAGAAAAGAATACCATGTTTGCAGCAGCCATACCTCTGCTGCAGACCTACATTGTCTGTCAGGCACCTGTGCCAGTATGTTGCCCTTCAAACAGCTGTTAAGGCCGATGAGGTTGAGATATTCTTGGTAAAAGAGCAGCAAGCCAACATTATCAGAGCTTCAGTCTCAGTAGATACATGCAAAGATAATTTGCAAGTGTTGAGAGAGCAGGAAACTTTGGCCGAACTTAAACCTGATAATTTTATCTCTGGCCATCTGCTTATGGCATATAAGAGGAGGCTGTTGAACTCAACTGCGGCTAGCTTGAGGTGA 1263 0.4632 MPAQKRLFDAPEEGALHGESNHHEKPEDGLESDRSPSESTGDKEEFVVIKLSDIRKEVQCPICLGVIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEQEELALHEDEKARNKQIQESIAQMLQRQAEALGKKRNAKAITRRSQGNYRTSHVRARRNCRSAIELQGSDDTEDMNDDDGAKGSSSGDELIEIRSKRFKRGAGAQFPPHSATTVADGASDENAPEVSREFLSPSSTLAWGKNGHRSHTRVNGKNARNSRLAKLIDNLRSLEENDDEFGVCLMLVPFDEKRIPCLQQPYLCCRPTLSVRHLCQYVALQTAVKADEVEIFLVKEQQANIIRASVSVDTCKDNLQVLREQETLAELKPDNFISGHLLMAYKRRLLNSTAASLR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1731 420 Coils Coil 283 303 - -
Lele16g1731 420 Coils Coil 409 420 - -
Lele16g1731 420 SMART ring_2 60 99 IPR001841 -
Lele16g1731 420 MobiDBLite consensus disorder prediction 208 229 - -
Lele16g1731 420 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
Lele16g1731 420 PANTHER OS11G0578200 PROTEIN 19 410 IPR044592 -
Lele16g1731 420 Coils Coil 137 157 - -
Lele16g1731 420 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Lele16g1731 420 SUPERFAMILY RING/U-box 47 131 - -
Lele16g1731 420 CDD RING-HC_RING1_like 60 100 - -
Lele16g1731 420 MobiDBLite consensus disorder prediction 162 254 - -
Lele16g1731 420 MobiDBLite consensus disorder prediction 1 43 - -
Lele16g1731 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 130 IPR013083 -
Lele16g1731 420 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
Lele16g1731 420 MobiDBLite consensus disorder prediction 10 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1731 Lele-ChrLele16 10060395 10064437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1731 53 123 C3H Transcription Factor Family AT3G23060 32.432 3.01e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0786 13 19715073 19720179 Lele16g1731 16 10060395 10064437 CCT
Lele14g0676 14 18071951 18077006 Lele16g1731 16 10060395 10064437 CCT
Lele15g1697 15 10076638 10081742 Lele16g1731 16 10060395 10064437 CCT
Lele16g1732 16 10069299 10074984 Lele16g1731 16 10060395 10064437 CCT
Lele13g0800 13 19796195 19797675 Lele16g1731 16 10060395 10064437 CCT
Lele14g0690 14 18165235 18167845 Lele16g1731 16 10060395 10064437 CCT
Lele15g1679 15 9999250 10001395 Lele16g1731 16 10060395 10064437 CCT
Lele16g1715 16 9985100 9987261 Lele16g1731 16 10060395 10064437 CCT
Lele13g0788 13 19729397 19730209 Lele16g1731 16 10060395 10064437 hybridization
Lele14g0677 14 18082646 18088632 Lele16g1731 16 10060395 10064437 hybridization