LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele16g1728	ATGTCACTCTCAAAATCTCCTTCTGCTGCCGATGAGGATAGCGACCCATCGATTGAAATGGAAGTAGAGGAAGATCCCGAGGAAGAAGAATATGAAGAAGTGGAAGTAGAATATGAAGAAGAGGAAGATCCCGAGGAAGTAGAATATGAAGAAGTGGAAGTAGAGGAAGAAGAATATGAAGAAGTGGAAGTGGAGGAAGAAGTGGAGGAAGAGGAAGAGGAAAAAAAAGAGAACGGAGAGGAAGTGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGAGAAGGGAGAGGAAGGGGAAGAAGAGGAGAAGGGAGAGGAAGGAGAAGAAGAGGAGCAGGGAGAGGAAGGGGAAGAAGAGGAGCAGGGAGAGGAGAAGGGAGAGGAAGAGGAAGAGGAAGAGGAGGAAGAAGAGGAGGTGGAGGAGGAGGAGGAGAAGGGAAAGGAGGACAAATTTCAGGTGTCAGAACCTCCAGAAGATGCCGCTAAGGACCACCCTGAAGAGTTGAGCCAACATATGGAGTCTGAGGGGCAAGAGAGGAACTTGAGGCTAGTTTCTTCTGTGGCAGTAAACCCTGATACAGTGTCTGCAGAAAATAACGACTCATGTAAGGTTCTTACGATGGAAAAGGAAGATTTTCAGCTGGAACATGTTACTCAAAGTAGTCCAAATTCAAGAAATAATGTGGCTACTGCTGAAGATGATAAACATCAAGGGTTAGATGATGCTAAAGAAAGTAATGGATCCCCTCTAAAATCTAAAACCTTTGAAGCATACAATGAACCAAGTTGTGACAGCAAAGCTTATGTATGTGGTGTTAAAGAGTCTGGGACTGTCAGATCATCCACTGATGCTGAAAAAGATGTGGCTATTGACATCCAGCTGAGAGGCTGCTCTGTTGAGGATGCTTACGTTGGCACTCAGAATTCTATAAACAAAATAAAGCAATTGAACATGCATTCAGGGGATGAAATGAAGCAAATGACATCAAGATTTTCCAGATTTACTTCCCCTGATATGAGGACTCAGAGTCTTTCTCCCAGTGTTGAGATGAAAGATGCAAACAAACGGCCGGCAATGATATGCAGCTTTTTTGCTAAAGGATGGTGTATCAAAGGCAGTTCGTGTAGGTTTCTTCATATAAAAGATCAATTAAATAATACTGGCCAGCAGGCTGAAGGAGACTTGGTTTCTACAAATTGGAAGAGAGAAAGGCAATTGGAGGAAGGTCTGAGAGGTAATGCTGAGACATCAGGAATGCCTGATGCAACAGTTCCTTTGGCGAGCTCTTCTCTGCATTCTTCTGAATTTTCTGTAAAAGAGACCATCCAGGATGAACAAAAAGCAAGCCCGAGTCAGCATCCACCTCAAGATAAACAGAAGTTTCCATTACATTCGAAAGAGGATTTATCTTCTAAGAACCATGTCTTACCAATTGGTAGAGATGGTTCTGCATCAAGGGATGGCTTGATTCCTGAAAGTGGATCTATATTTAATGCGTCAAACAACTATTTCAGCAGGAACCCCTCTTCTTATCCATCCTGTGTGGAGGGATTGGCTCCCATTGAAAACCAACAGGTGTACAACAAATATGCTTCCGAAGTTTCAGCTCCATCAAGTTATTTGATGTCTTCGAATTTATCTATTGGTGCAAGTACTTTGTATGCTCAAAAGCTGTTGAAAAGTGGCAAAGAATATCATGTCCCTAGATCCACTTTCTTGGGTTCGGAATGGGAGAAGTTGCCTCTAACTAGTTCATCTGGAGTTCGGCCACATGCCACTGGATATAAAAGAAAAATATCTTCTCATGATTGGGAGCCATCTGTACCTTTTCGACCATCATTTTTTATTACTTCAGCCAGTACATCATCTTCTGGAGATATGTATGACCCGTTTCATCCTTGTATTGAGATAACCAATATAGGAGATGGATCCCTGAAAGCTTCCTTTTTTGTTCACGGGCCTCCCATCCAGGCTTCATCTGAGGTGCGGACATATGGTGATTGTGCTGTAGCTGGGGACAAGGTGGCAGATATTAATTACGACAGGAGTTCTGTATCGTCTCATCACAGATTTTATGAGAATGAGGCAAACAAGAGTTATATTCCTTCAGAAAAAGATGGCTGTGCACATGAAATGGAGACAACAGCCACGACCCATCTAAACTCCCATAACGGTAAAGCAAGCATTGGAGAAAATACCCTTGCTGTTGAAGATAATACAAAAACTGAAGTTGAACAAACAGAGGATGATGCAAGTTCTCGAGGTGAAGGATCGTTACCTAAAAAGAGAAGAGTAGATAAGGCTAAGAAAAACAATGAAATTGATGTTGATTTTCAGATGGATGGCAATATGCGGAATGATTTAAAGGGTCTAAAAATTTTTCGGGCAGCTCTTGTAGATTTAGTGAAAGAGTTGCTAAAGCCATCTTGGCAGGAGGGTCATCTCAGCAAGGATGCACATAATACAATAGTTAAGAAATCAGTTGACAAAGTTATTAGCACCCTACAGCCCCACCAGATTCCAACCACCATTGATGCAGTTAACCACTATGTTTCTTCATCTCGGTTGAAAATTGTGAAGCTCGTTGATGGATATGTCAATAAATACAGCAAGTCTTGA	2628	0.4235	MSLSKSPSAADEDSDPSIEMEVEEDPEEEEYEEVEVEYEEEEDPEEVEYEEVEVEEEEYEEVEVEEEVEEEEEEKKENGEEVEEEEEEEEEEEEEEKGEEGEEEEKGEEGEEEEQGEEGEEEEQGEEKGEEEEEEEEEEEEVEEEEEKGKEDKFQVSEPPEDAAKDHPEELSQHMESEGQERNLRLVSSVAVNPDTVSAENNDSCKVLTMEKEDFQLEHVTQSSPNSRNNVATAEDDKHQGLDDAKESNGSPLKSKTFEAYNEPSCDSKAYVCGVKESGTVRSSTDAEKDVAIDIQLRGCSVEDAYVGTQNSINKIKQLNMHSGDEMKQMTSRFSRFTSPDMRTQSLSPSVEMKDANKRPAMICSFFAKGWCIKGSSCRFLHIKDQLNNTGQQAEGDLVSTNWKRERQLEEGLRGNAETSGMPDATVPLASSSLHSSEFSVKETIQDEQKASPSQHPPQDKQKFPLHSKEDLSSKNHVLPIGRDGSASRDGLIPESGSIFNASNNYFSRNPSSYPSCVEGLAPIENQQVYNKYASEVSAPSSYLMSSNLSIGASTLYAQKLLKSGKEYHVPRSTFLGSEWEKLPLTSSSGVRPHATGYKRKISSHDWEPSVPFRPSFFITSASTSSSGDMYDPFHPCIEITNIGDGSLKASFFVHGPPIQASSEVRTYGDCAVAGDKVADINYDRSSVSSHHRFYENEANKSYIPSEKDGCAHEMETTATTHLNSHNGKASIGENTLAVEDNTKTEVEQTEDDASSRGEGSLPKKRRVDKAKKNNEIDVDFQMDGNMRNDLKGLKIFRAALVDLVKELLKPSWQEGHLSKDAHNTIVKKSVDKVISTLQPHQIPTTIDAVNHYVSSSRLKIVKLVDGYVNKYSKS	875

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele16g1728	875	MobiDBLite	consensus disorder prediction	218	257	-	-
	Lele16g1728	875	MobiDBLite	consensus disorder prediction	148	181	-	-
	Lele16g1728	875	Coils	Coil	120	153	-	-
	Lele16g1728	875	Coils	Coil	45	106	-	-
	Lele16g1728	875	MobiDBLite	consensus disorder prediction	14	147	-	-
	Lele16g1728	875	MobiDBLite	consensus disorder prediction	182	204	-	-
	Lele16g1728	875	MobiDBLite	consensus disorder prediction	413	492	-	-
	Lele16g1728	875	PANTHER	PROTEIN FRIGIDA-ESSENTIAL 1	90	874	-	-
	Lele16g1728	875	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	363	382	IPR000571	GO:0046872
	Lele16g1728	875	ProSiteProfiles	Zinc finger C3H1-type profile.	358	385	IPR000571	GO:0046872
	Lele16g1728	875	MobiDBLite	consensus disorder prediction	1	204	-	-
	Lele16g1728	875	SMART	c3hfinal6	358	384	IPR000571	GO:0046872
	Lele16g1728	875	MobiDBLite	consensus disorder prediction	425	461	-	-
	Lele16g1728	875	Gene3D	-	353	464	-	-
	Lele16g1728	875	SUPERFAMILY	CCCH zinc finger	358	382	IPR036855	GO:0046872
	Lele16g1728	875	MobiDBLite	consensus disorder prediction	462	477	-	-
	Lele16g1728	875	MobiDBLite	consensus disorder prediction	744	771	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele16g1728	Lele-ChrLele16	10047130	10051485	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Lele16g1728		zf-CCCH	0.00015	CL0537

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele16g1728	16	10047130	10051485	Lele16g1728	16	10047130	10051485	ECH
	Lele13g0790	13	19737080	19738953	Lele16g1728	16	10047130	10051485	hybridization
	Lele14g0679	14	18105371	18109743	Lele16g1728	16	10047130	10051485	hybridization