Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1710 ATGGGTGTGGACTATTACAAGATTCTGCAGGTTAACAAGAATGCCACAGAGGAAGATTTGAAGAAAGCTTACCGGAAGCTTGCCATGAAATGGCACCCTGATAAGAACCCAAACAATAAGAAAGAGGCTGAGGCCAAATTCAAACAAGTCTCTGAAGCCTACGAGGTTCTAAGTGATCCCCAGAAGAGAGTAATTTATGATCAGTATGGAGAAGAAGGGCTCAAAGGGCAGGTGCCACCTCCAGATGCTGGTGGGGCTTCATTCTTCCAAACTGGAAATGGTCCAACGACGTTTAGGTTTAACCCCAGAAATGCAGACGACATTTTTGCTGAATTTTTCGGGTTTTCAAACCCATTTGGTGGAATGGGCGGCGGCGGCGGCATGAGAGGTGGCACAAGGTCCTTTGGTGGAATGTTTGGGGATGATATATTCAGCTCATATGGAGAAGGCAGGCCTATGAGTCAACAAGGTCTACGGAAGGCGCCTCCTATTGAAAACACATTGCCTTGCAGCCTTGAGGAGCTCTATAAGGGCACTACCAAGAAGATGAAGATCTCAAGAGAACTTGTAGATGCAAGCGGAAAAACTTTACCAGTGGAGGAAATCTTAACCATTGAAATCAAACCGGGTTGGAAAAAGGGTACGAAGATCACGTTCCCGGAGAAAGGGAACGAACAACCAAATGTGATCCCCGCAGATCTGATATTCATGATCGATGAGAAACCTCACAGTGTGTTTACAAGGGATGGCAATGATCTGGTAGTGACACAAAAGATAACACTTGCAGAAGCTTTAACAGGCTACACTGTGCATCTGACTACGCTGGATGGTAGGACTCTGAACATTCCCATAGACAACGTAATACATCCAACCTATGAAGAGGTTGTCCCAAGAGAAGGCATGCCAATTCCCAAAGAACCTTCGAGGAGGGGCAACCTTAGGATTAAGTTCAACATCAAATTCCCAACAAGGTTGACATCGGACAAGAAAGCTGGAATTAAGAAACTTTTAGGGCCATAA 1020 0.4539 MGVDYYKILQVNKNATEEDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQVSEAYEVLSDPQKRVIYDQYGEEGLKGQVPPPDAGGASFFQTGNGPTTFRFNPRNADDIFAEFFGFSNPFGGMGGGGGMRGGTRSFGGMFGDDIFSSYGEGRPMSQQGLRKAPPIENTLPCSLEELYKGTTKKMKISRELVDASGKTLPVEEILTIEIKPGWKKGTKITFPEKGNEQPNVIPADLIFMIDEKPHSVFTRDGNDLVVTQKITLAEALTGYTVHLTTLDGRTLNIPIDNVIHPTYEEVVPREGMPIPKEPSRRGNLRIKFNIKFPTRLTSDKKAGIKKLLGP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1710 339 Coils Coil 6 26 - -
Lele16g1710 339 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lele16g1710 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 245 330 IPR008971 GO:0006457|GO:0051082
Lele16g1710 339 Gene3D - 243 323 - -
Lele16g1710 339 FunFam DnaJ subfamily B member 13 243 323 - -
Lele16g1710 339 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lele16g1710 339 Gene3D - 163 241 - -
Lele16g1710 339 Pfam DnaJ C terminal domain 164 322 IPR002939 -
Lele16g1710 339 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lele16g1710 339 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lele16g1710 339 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lele16g1710 339 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lele16g1710 339 FunFam DnaJ subfamily B member 13 3 123 - -
Lele16g1710 339 SUPERFAMILY Chaperone J-domain 3 127 IPR036869 -
Lele16g1710 339 Gene3D DnaJ domain 3 123 IPR036869 -
Lele16g1710 339 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 337 - -
Lele16g1710 339 SMART dnaj_3 3 62 IPR001623 -
Lele16g1710 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 243 IPR008971 GO:0006457|GO:0051082
Lele16g1710 339 FunFam Dnaj homolog subfamily b member 160 241 - -
Lele16g1710 339 CDD DnaJ 4 59 IPR001623 -
Lele16g1710 339 Pfam DnaJ domain 4 67 IPR001623 -
Lele16g1710 339 CDD DnaJ_C 162 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1710 Lele-ChrLele16 9957031 9958698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1710 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 1.08e-09 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1710 16 9957031 9958698 Lele16g1710 16 9957031 9958698 ECH
Lele13g0806 13 19822234 19823784 Lele16g1710 16 9957031 9958698 hybridization
Lele14g0695 14 18191466 18192481 Lele16g1710 16 9957031 9958698 hybridization