Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1708 ATGGATGGCTCCACCACACTTCCGCCTCGAGTCGCGGCCAAATATCGGCTACGTCTCGTAGATTTCGTGCACTCGTTCCATTCCTATCCTTCCCGCCTCTATAGTATTACAACCACATTTTTTGTTTTTTCCGCTTGCTTCTTCTCCCTCTGTTTCGCACTTGATTCCATGGAGTCGCGAGTGTTGTCACGCGCCACCGCCTTCTCCTCCTCCTCCCCCTCCCTCCCCCACCTCCGCATGCTCTCGCGCGACTCCCACAATGCTTCCTTCCTCTCCGTCAAGCCGATCGGGGCTGTTGCCGATGGCGGCAATCTTATCTGGGGAAGGCAGCTCCGTCCCGCGCTCTGCTCGCCAGCCTTGAGGAAAGACGCTCCCCTCCGGCCTTGCCTCGCCGCTGCCTCCTCTCCGGCTGAGGGAAGTGATTCCGCCGGGGAGGCGAAAGTGGCTCCGGTTGGGTTTTTCGATAAGTACCCGGCGCTGGTGACTGGATTCTTCTTCTTCATGTGGTACTTCTTGAATGTGATCTTCAACATCCTCAACAAGAAGATCTATAATTACTTCCCTTATCCATTCTTCGTTTCGGTCATCCATTTATTCGTAGGTGTGGTGTACTGTCTTGTGAGCTGGGCCGTGGGCCTACCCAAGCGAGCTCCCATAGACTCAAACCTGCTGAAGGTGCTGATTCCTGTGGCAGTGTGTCACGCATTAGGCCACGTGACCAGCAATGTGTCATTCGCTGCTGTTGCAGTTTCCTTCACACACACCATTAAAGCTCTGGAGCCATTCTTCAATGCTGCTGCTTCCCAGTTCATACTCGGTCAACCAATTCCTATTACTCTGTGGCTCTCTCTGGCTCCTGTTGTTCTTGGTGTGTCAATGGCTTCACTGACTGAGCTCTCCTTCAACTGGACTGGTTTTATAAGTGCTATGATTTCAAACATTTCATTCACATATCGCAGTATCTATTCAAAGAAAGCTATGACTGATATGGACAGTACAAATGTGTATGCCTACATCTCCATCATTGCCTTAATTGTCTGCATACCACCAGCCATGATTTTCGAGGGGCCTGCACTTATGAAGGGTGGTTTCAGTGATGCAATTGCTAAAGTTGGTACTGTCAAGTTCGTGTCAGATCTTTTCTGGGTCGGAATGTTTTACCACCTCTACAATCAGCTGGCCACCAACACATTGGAGAGGGTGGCTCCTCTGACTCACGCAGTTGGGAATGTACTGAAACGTGTGTTTGTGATTGGCTTCTCAATCATAGTCTTCGGTAACAAGATCTCCACCCAAACTGGTATTGGAACCTGCATTGCAATTGCAGGAGTGGCCATCTATTCTCTCATCAAGGCCAGGATGGAAGAGGCGAAACGACAAGCGAAAGCGGCGTAA 1395 0.5068 MDGSTTLPPRVAAKYRLRLVDFVHSFHSYPSRLYSITTTFFVFSACFFSLCFALDSMESRVLSRATAFSSSSPSLPHLRMLSRDSHNASFLSVKPIGAVADGGNLIWGRQLRPALCSPALRKDAPLRPCLAAASSPAEGSDSAGEAKVAPVGFFDKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPFFVSVIHLFVGVVYCLVSWAVGLPKRAPIDSNLLKVLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQPIPITLWLSLAPVVLGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALIVCIPPAMIFEGPALMKGGFSDAIAKVGTVKFVSDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTCIAIAGVAIYSLIKARMEEAKRQAKAA 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1708 464 SUPERFAMILY Multidrug resistance efflux transporter EmrE 380 450 - -
Lele16g1708 464 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 160 458 IPR004696 GO:0016020|GO:0022857|GO:0055085
Lele16g1708 464 Pfam Triose-phosphate Transporter family 161 448 IPR004853 -
Lele16g1708 464 Coils Coil 447 464 - -
Lele16g1708 464 SUPERFAMILY Multidrug resistance efflux transporter EmrE 203 297 - -
Lele16g1708 464 PANTHER SOLUTE CARRIER FAMILY 35 163 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1708 Lele-ChrLele16 9936896 9940774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1708 57 462 Antiporters AT5G46110 77.938 0.0 629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0808 13 19839163 19843041 Lele16g1708 16 9936896 9940774 hybridization
Lele14g0698 14 18208897 18211553 Lele16g1708 16 9936896 9940774 hybridization