Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1704 ATGACATGGTGCAATGAGTCTCAAGATGAAGAAGGGATTCAATTAAGCAATCCCACAACCTCTGAAACTCGAATCGTAACTTGCCCTTCATGCGGACATACCCTAGATTTTCAAGATCAGGGTGACATACTTACCGAATTGCCTGGGCTACCATCTGGGGTGAAGTTTGATCCGAACGAGCAGGAGATATTACAACATTTGGAAGCAAAAGTTCTGTGTGATGTTCGTAAGCTTCATCCTCTTATTGATCAGTTCATTCCCACTATTGAAGGCGAGAATGGCATCTGTTATACTCACCCAGAAAAGCTACCAGGACTAAGCAAAGATGGGCAGATTCGGCACTTCTTCCACAGGCCATCAAAAGCATACACAACAGGAACAAGAAAAAGAAGAAAAGTTCACTGTTCAGACAATGAAGAAGGAGGAGGCGAAACAAGATGGCACAAAACAGGAAAAACAAGACCAGTCTTCGTTAATGGTGAACTCAAGGGTTTCAAGAAGATACTTGTGCTTTACACCAACTATGGCAGAAAAAGGAAGCCCGAGAAGACAAGCTGGGTGATGCATCAGTACCACCTCGGAACCAACGAAGAAGAGAAAGAAGGACAACTCGTGGTGTCCAAGGTTTTCTACCAGACGCAACCTAGACAATGTGGTGGTTCTTCTTCCATTATTATTAAGGATCCTTATGGCGATGATCAGAAAACAGCCAACAACGACCAAACGGGAAGAAGTAATGATCGTGACACGTGCTCTACAATGATACCTAATAATAATAATGGATCTGGTGTTTTAGAGTACTACAGTGCTCCTCACATGAGTTATGAGCATGTGGGGGTGGGTCATCATAATAACAACGTTAGAGAAAGTTCACCTCAACTTATTCCAAACTTCATCCTCCAAGGTGATGCTTCTTCTTTCTTCTCATTTAGCGATGGATTGAAGCGAACAAAGACATGA 960 0.4281 MTWCNESQDEEGIQLSNPTTSETRIVTCPSCGHTLDFQDQGDILTELPGLPSGVKFDPNEQEILQHLEAKVLCDVRKLHPLIDQFIPTIEGENGICYTHPEKLPGLSKDGQIRHFFHRPSKAYTTGTRKRRKVHCSDNEEGGGETRWHKTGKTRPVFVNGELKGFKKILVLYTNYGRKRKPEKTSWVMHQYHLGTNEEEKEGQLVVSKVFYQTQPRQCGGSSSIIIKDPYGDDQKTANNDQTGRSNDRDTCSTMIPNNNNGSGVLEYYSAPHMSYEHVGVGHHNNNVRESSPQLIPNFILQGDASSFFSFSDGLKRTKT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1704 319 MobiDBLite consensus disorder prediction 235 256 - -
Lele16g1704 319 SUPERFAMILY NAC domain 42 212 IPR036093 GO:0003677|GO:0006355
Lele16g1704 319 MobiDBLite consensus disorder prediction 221 256 - -
Lele16g1704 319 FunFam NAC domain-containing protein 73 59 216 - -
Lele16g1704 319 ProSiteProfiles NAC domain profile. 50 212 IPR003441 GO:0003677|GO:0006355
Lele16g1704 319 MobiDBLite consensus disorder prediction 126 150 - -
Lele16g1704 319 Pfam No apical meristem (NAM) protein 51 193 IPR003441 GO:0003677|GO:0006355
Lele16g1704 319 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 15 237 IPR044799 GO:0003700
Lele16g1704 319 MobiDBLite consensus disorder prediction 130 150 - -
Lele16g1704 319 Gene3D NAC domain 59 216 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1704 Lele-ChrLele16 9894613 9897342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1704 1 230 NAC Transcription Factor Family AT4G28500 65.844 3.75e-114 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele16g1704 NAM 4.6e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1704 16 9894613 9897342 Lele16g1704 16 9894613 9897342 ECH
Lele15g1668 15 9931420 9934931 Lele16g1704 16 9894613 9897342 ECH
Lele13g0811 13 19859492 19862221 Lele16g1704 16 9894613 9897342 hybridization
Lele14g0702 14 18244542 18247209 Lele16g1704 16 9894613 9897342 hybridization