Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1702 ATGGGTTTGATCGATCTCAACACTACTGAGGACGACGAAACGCCGTCGTCGGGTTCCTCTGCTTCATTGTCTTCTCATTCCGGTATTAGCATTTCGGCCTCCACTTCTCCTTCTCCTTCGTCCGTCTGCTTGGAGCTATGGCACGCTTGTGCGGGTCCAATGATCTCGTTACCGAAAAAAGGAAGCATCGTGGTTTATTTCCCTCAGGGCCACCTTGAGCAGCAGGCTCAGGATTTTCCGGTCTCTGCATACAAAATCCCACCCCATGTTTTCTGTCGCGTTGTAGATGTTAAGCTCCATGCGGAGGAAGGTATAGATGAGGTGTACTGTCTGGTGTCGCTGGTTCCTGAAAGTGAGGCTGAAAGAAGATTTCGGGAAGGTGAAATCGATGCTGACTGTGAAGATGAGGATGCTGCAGCTGCAGCTGCAGCTGCAGTGAAGTCTACAACACCGCATATGTTCTGCAAGACCCTGACAGCTTCTGATACTAGCACTCATGGTGGTTTCTCTGTGCCTAGGCGAGCGGCTGAAGATTGCTTTCCCCCGCTGGATTACAATCAACAGCGTCCTTCACGAGAGCTTGTGGCAAAGGATCTGCATGGCCTGGAGTGGAAGTTCAGGCATATTTACAGGGGGCAGCCTCGCAGGCATTTGCTTACAACTGGTTGGAGTGCATTTGTAAACAAGAAGAAGCTTGTGGCTGGAGATGCTGTGCTGTTTCTGAGGGGTGACGATGGAGTTCTGAGATTAGGCATTCGCAGGGCATCTCAGTTGAAATGTGGTGGTAACTTTTCAGTTCCATCTGGCCTGCATCTTAATCCCAGCAGTTTCATGGATGTGGTTAATGCAATATCTACAGGATGTGTCTTTAGCGTTTGCTATAACCCAAGGGCTAACTCATCAGAGTTCATAATTCCACTCCACAAATTTCTGAAGAGCCTTGATCAATTTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAACGAAGATGCAGAGGATTGGTTGTTGGAATTAGTGATGCAGATCCTGTTAGATGGCCCGGATCCAAATGGAGATGCCTTATGGTAAGGTGGGAAGACATGGAAACCACTAGGCATAACAGGGTTTCCCTATGGGAAATTGAGCCATCTAGTTCTGCTTCCAGTCCCAACAACTTCAATGCAGCTGGTTTAAAGAGGACCAGGATGGGTTTGCCTTCTTTGAAACAAGAATTTCCAGTTCCAAATGGGATTGGAACATCAGACTTTGGGGAATCATCGAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATATTCCTTTTGATGGTATTAGTGCTCAGAGTCACCCCTTTTCTGAAATAAGGAGGCGCTATCCTGGTTCAAGTGTTTCTGGGATCGCCGCTTCAGGAAATAATTTCAGAATTCCACAAGTGCATTCTGATGTTCCGTGCAATGGCATAGGCTTCAGTGAATCGTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGAGCTTTTTCTGGTAATGATGTTCAAGGAAATGGTCGCTATGGAATTTTTGACAGTTGTCAAATGCCTCCGGGTTCCAGAAATGGATGGACCGTTTCAGTACAGGATAATAGTTCTGCCAATCTGCACCCTTCTGTTCCATCCGGCCAAGTGTCGTCACCATCATCTGTCTTCATGTTCCAGCAAGCAGTGAATCCTACTCCCAATTGTCACTACAATAATGGCATTACAAATCAGAGGATGGAGAGTAAAATGCAACATCAAGGACTGCATGCTTCTGAAATCAAAGGTGGAAAATTTGCATCAGTCTCATCTTATCAGCCTAGTTTCTGTGGGCAAACTCAGGGTAGAAAGAAATCTATCGGCAGGTTTGGGCACGATCAAATGGAGACTTTATCACACAATTCTGTATCGCCGCTGGGAGATGGTCAAGAGCTGATTTCTTCCTATAAAAGTAGCTGCAGGCTCTTTGGTTTTTCATTGACTCAGGAAAATCACATTGCAAATTGCAAATGA 2061 0.4605 MGLIDLNTTEDDETPSSGSSASLSSHSGISISASTSPSPSSVCLELWHACAGPMISLPKKGSIVVYFPQGHLEQQAQDFPVSAYKIPPHVFCRVVDVKLHAEEGIDEVYCLVSLVPESEAERRFREGEIDADCEDEDAAAAAAAAVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSRELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVAGDAVLFLRGDDGVLRLGIRRASQLKCGGNFSVPSGLHLNPSSFMDVVNAISTGCVFSVCYNPRANSSEFIIPLHKFLKSLDQFYSVGMRFRMRFETEDAAERRCRGLVVGISDADPVRWPGSKWRCLMVRWEDMETTRHNRVSLWEIEPSSSASSPNNFNAAGLKRTRMGLPSLKQEFPVPNGIGTSDFGESSRFQKVLQGQEILGVNIPFDGISAQSHPFSEIRRRYPGSSVSGIAASGNNFRIPQVHSDVPCNGIGFSESFRFQKVLQGQEILPSQPYGRAFSGNDVQGNGRYGIFDSCQMPPGSRNGWTVSVQDNSSANLHPSVPSGQVSSPSSVFMFQQAVNPTPNCHYNNGITNQRMESKMQHQGLHASEIKGGKFASVSSYQPSFCGQTQGRKKSIGRFGHDQMETLSHNSVSPLGDGQELISSYKSSCRLFGFSLTQENHIANCK 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1702 686 Gene3D - 317 390 - -
Lele16g1702 686 MobiDBLite consensus disorder prediction 1 30 - -
Lele16g1702 686 Pfam Auxin response factor 281 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele16g1702 686 MobiDBLite consensus disorder prediction 9 30 - -
Lele16g1702 686 SUPERFAMILY DNA-binding pseudobarrel domain 147 257 IPR015300 -
Lele16g1702 686 CDD B3_DNA 152 254 IPR003340 GO:0003677
Lele16g1702 686 Pfam B3 DNA binding domain 154 255 IPR003340 GO:0003677
Lele16g1702 686 FunFam Auxin response factor 317 388 - -
Lele16g1702 686 FunFam Auxin response factor 152 256 - -
Lele16g1702 686 ProSiteProfiles B3 DNA-binding domain profile. 154 256 IPR003340 GO:0003677
Lele16g1702 686 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 681 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele16g1702 686 Gene3D - 152 255 IPR015300 -
Lele16g1702 686 SMART B3_2 154 256 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1702 Lele-ChrLele16 9875607 9880075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1702 38 519 B3 DNA Binding Superfamily AT5G60450 49.798 1.71e-140 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele16g1702 B3 7.2e-22 CL0405