Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1691 ATGGTTTTGGCCTCCCAGACAGATCTTCCTTTCAACGAGAACGATTCACAAGACATGTTCATATACCAAGTCCTCCACGAGGCCAACGCTCTTCACACCACCGCCGCCGCCGCCGCCTCCTCCTCCTTCACCGCCACCAACGCCGCTGCATTCATCCCGCAGAGGCAACAAGCCACCGCACAGAACGGGCTAGAGCCGACCAGGACCGTCGGAAAGAAGCATTACAGAGGCGTAAGGCGGCGGCCATGGGGGAAGTACGCGGCGGAGATCCGAGACTCCTCCCGGCACGGAGCACGCGTGTGGCTGGGCACGTTCGAAACCGCCGAGGAAGCCGCCATGGCTTACGATCGAGCGGCTTTTAGAATGAGAGGCGCTAAAGCCTTGCTCAATTTTCCCGCTGAAATCGGAGCTTCTTCCATGGACATGTCTCATGATTCTCACAAACGAAATATGAGCTCCTCATCTGGAAGATCATTGGGCAATAAAGATTCAGATTCAAGTGCTAGCAGCAGTCCCTGCGTTAATCCCATTGCGAACAAATAG 543 0.5562 MVLASQTDLPFNENDSQDMFIYQVLHEANALHTTAAAAASSSFTATNAAAFIPQRQQATAQNGLEPTRTVGKKHYRGVRRRPWGKYAAEIRDSSRHGARVWLGTFETAEEAAMAYDRAAFRMRGAKALLNFPAEIGASSMDMSHDSHKRNMSSSSGRSLGNKDSDSSASSSPCVNPIANK 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1691 180 PANTHER DNA-BINDING DOMAIN 27 163 IPR044808 GO:0003700|GO:0009873
Lele16g1691 180 MobiDBLite consensus disorder prediction 152 180 - -
Lele16g1691 180 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Lele16g1691 180 CDD AP2 73 133 IPR001471 GO:0003700|GO:0006355
Lele16g1691 180 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Lele16g1691 180 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Lele16g1691 180 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Lele16g1691 180 FunFam Ethylene-responsive transcription factor 2 73 134 - -
Lele16g1691 180 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Lele16g1691 180 MobiDBLite consensus disorder prediction 138 180 - -
Lele16g1691 180 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Lele16g1691 180 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1691 Lele-ChrLele16 9800155 9800697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1691 5 141 AP2-EREBP Transcription Factor Family AT4G17500 46.711 8.17e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele16g1691 AP2 8.3e-16 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1691 16 9800155 9800697 Lele16g1691 16 9800155 9800697 ECH
Lele13g0825 13 19938958 19941601 Lele16g1691 16 9800155 9800697 hybridization
Lele14g0716 14 18346405 18347154 Lele16g1691 16 9800155 9800697 hybridization