LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele16g1690	ATGGCTGTTCATGGCAAGCAAGATTCAGCTTCTGAAAGCATTCTTGAGAACGTGTGGTCCAAAATCATTAACGGCAATAATAATAATAATGGATCACAATGGGAAGAACTGCCTGATCTAGATGAAAGAGAGGGATCTATGGAAGTTCTGAGAAGGCTTCCTAGTTTAGGAAGATGGATATCACTGGGAGCTGATTTCTGGGAAGAAATCTTAGATGGGTTTCCAGCTTGTAGCAGTAATAATGATTCAGGAATCTGCAGTGCTTTTGAATGCAATAAGAACGTTGAAGAAGAAGAAGTGAGAGTGAAAGCAGAGAAGAAGAAGGTCTCTGCAAAACACTACAGAGGAGTGAGAAGAAGGCCATGGGGGAAATATGCAGCAGAAATCAGGGACTCATCAAGGAAAGGAGCTAGGGTTTGGCTTGGGACTTTCGACACAGCTGAAGAAGCAGCTTTGGCTTATGATAAGGCTGCTTTGAGAATTAGAGGCCCTAAGGCATACCTGAATTTCCCAATTGAGACTGTTTCAAAGGCCTTAGTATTTGACCATAAAGGAAATTGCTGTCAAGAAAATTCCTGCAGTTCCAGAAAGAGAAGTAGGTGTAGTGGGGGGAGAGATGAACTTGTTGGTGTGATGAATGAAGAACCTGCAAAGAAGAAAATGGTACTAGGGAATGAAGAAGATGATGTTTTTGAGTTTCAGGACTTGGGAAATGATTATTTGGAAAGTTTGTTATCTTCATTTTGA	747	0.411	MAVHGKQDSASESILENVWSKIINGNNNNNGSQWEELPDLDEREGSMEVLRRLPSLGRWISLGADFWEEILDGFPACSSNNDSGICSAFECNKNVEEEEVRVKAEKKKVSAKHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAYLNFPIETVSKALVFDHKGNCCQENSCSSRKRSRCSGGRDELVGVMNEEPAKKKMVLGNEEDDVFEFQDLGNDYLESLLSSF	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele16g1690	248	Pfam	AP2 domain	113	163	IPR001471	GO:0003700\|GO:0006355
	Lele16g1690	248	Coils	Coil	92	112	-	-
	Lele16g1690	248	PANTHER	DNA-BINDING DOMAIN	94	243	IPR044808	GO:0003700\|GO:0009873
	Lele16g1690	248	PRINTS	Ethylene responsive element binding protein signature	137	153	IPR001471	GO:0003700\|GO:0006355
	Lele16g1690	248	PRINTS	Ethylene responsive element binding protein signature	114	125	IPR001471	GO:0003700\|GO:0006355
	Lele16g1690	248	FunFam	Ethylene-responsive transcription factor 2	112	173	-	-
	Lele16g1690	248	Gene3D	AP2/ERF domain	112	173	IPR036955	GO:0003700\|GO:0006355
	Lele16g1690	248	CDD	AP2	112	172	IPR001471	GO:0003700\|GO:0006355
	Lele16g1690	248	ProSiteProfiles	AP2/ERF domain profile.	113	171	IPR001471	GO:0003700\|GO:0006355
	Lele16g1690	248	SMART	rav1_2	113	177	IPR001471	GO:0003700\|GO:0006355
	Lele16g1690	248	SUPERFAMILY	DNA-binding domain	113	173	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele16g1690	Lele-ChrLele16	9798809	9799555	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele16g1690	14	248	AP2-EREBP Transcription Factor Family	AT4G18450	36.601	4.01e-41	141

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele16g1690		AP2	2e-16	CL0081