Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1685 ATGATCAGCATCATTAGTTGGTTGGATGTTGAGAATTCCCACAGGGGTTATGGAGAAGATGACTCACCGGGTATCGGCCTGAGGGTGATGATCGCCGCAGCTTTCACGTTATTCGCTATCGTCTTCTTCATAATCGTCTTCCACTTCTACATCAGACGCCTTCGACGAAGTCGTCAGCTGAACCTGAGCAGACGCCTCGGCGATCTACCGGCGGTTTATCAAGTCAGTGCTCAAGTTTTGCCCATTGATGTGGAATCACGTTCACCGAACCGCGACCGTCAGGGGCTTGACTCTTCCGTCATGGCGTCGATTCCTAAGCTTTGGTACAAGCAAACGGACCAGTTCAAGGACGGGGAAATCGTAGAGTGCTCGGTTTGCTTAGCCATCATTGTGGAAGATGCAGCCGTTAGGGTTTTGCCTAACTGCAAGCACGTGTTTCATGTTGATTGTGTTGACACTTGGTTCGGTTCCAACACCACTTGCCCGATCTGCCGCACGGTGGTTGAACCCACCGTGACGTCTGGCGGTGGCGCTGTTCAACCCACGGCACCGCCGGAATTAGAGAGTGGCGGGACGATCTAA 582 0.5275 MISIISWLDVENSHRGYGEDDSPGIGLRVMIAAAFTLFAIVFFIIVFHFYIRRLRRSRQLNLSRRLGDLPAVYQVSAQVLPIDVESRSPNRDRQGLDSSVMASIPKLWYKQTDQFKDGEIVECSVCLAIIVEDAAVRVLPNCKHVFHVDCVDTWFGSNTTCPICRTVVEPTVTSGGGAVQPTAPPELESGGTI 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1685 193 FunFam E3 ubiquitin-protein ligase ATL6 84 171 - -
Lele16g1685 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 171 IPR013083 -
Lele16g1685 193 PANTHER RING FINGER DOMAIN-CONTAINING 32 168 - -
Lele16g1685 193 MobiDBLite consensus disorder prediction 173 193 - -
Lele16g1685 193 SMART ring_2 123 164 IPR001841 -
Lele16g1685 193 CDD mRING-H2-C3H2C2D_ZSWM2 122 165 - -
Lele16g1685 193 Pfam Ring finger domain 122 165 IPR001841 -
Lele16g1685 193 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Lele16g1685 193 SUPERFAMILY RING/U-box 101 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1685 Lele-ChrLele16 9766296 9768486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1685 25 170 C3H Transcription Factor Family AT2G42360 36.735 1.03e-27 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0829 13 19990199 19990744 Lele16g1685 16 9766296 9768486 hybridization
Lele14g0721 14 18375339 18378150 Lele16g1685 16 9766296 9768486 hybridization