Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1664 ATGGATTTCTCCAAGAAGCGCAAGACCGAGGAGAACGGAACCGACGATTCCGTGCCCTCAACAAACCCCCTTGGCGCGGATGACATCCGCAGGATCCTCCAACCCTTCACGCAAGAACAGCTTATCGACCTGCTTCAAGCAGCTTCTCTTCATCACCCTGACGTTCTCGAGTCTATACGTTCCGTCGCCGATCGTGACTCCGCCCTTCGGAAACTCTTTGTTCGGGGGCTTGCAGGGGAAACCACCACGGAGACACTCAGCAGTGTTTTCTCCTCTTTTGGACCGCTCGATGAGGCGATCGTTATCTTCGACAAAACGACCGGGAAGTCCAAAGGGTACGGCTTTGTGACGTTTAAGCACGTTGATGGTGCTATATTGGCTTTGAAAGAGCCCAGCAAGAAAATTGACGGGAGAATGACGGTGACCCAGCTTGCGGCTGCTGGATTATTGGCCAGTCAAGGGACTAATGCGGCTGCCGCAGCCACAAGTGATGTCTCTGCCCGAAAAATTTTCGTGGGCAATGTGCCGTTTGATATCTCGTCGGAGAGGCTGTTGAGTTACTTTTTGGCATTTGGGGAAATCGAAGAAGGGCCTCTCGGGTTTGACAAAGGTAATGGAAAGTCCAAAGGTTTCGCATTCTTTGTGTACAAAACGGAGGAGGGTGCTAAGGCATCTCTAGTTGAGCCAGTCAAAACTATTGATGGGCATCAAGTGCTTTGTAAATTGGCCATGGATAACAAGAAGGGAAAATCAGGAGGAGCTCCTAACCAGGGCCCTCCTGGGTTACCTGGCAATGGCATGGCAGCACAACAACCGCAACCATCTTTACCTGGCCCCATGATGGGATCAAATTATGGTGGCCATGGCTCTTCTTATGGGGGATTTGGTGGTGCGCATCAGGGCCCCATGGCAGTGCCCGGTAATAATTATGGGTTGCAGTCTTCATTGCCGCCATATGGCACTCAGGTTCCATCTACCTTAACTCCTAATAGCGGTGGGGGATACGGTCCTGGAATTGGAGGGGCTTATAGTGGTTCTCAGTTCAGTGGGCCAACTTCCGGTGATTATGGCGCTAGGCTGCCTCCAACTTCTGCTGGAATGCCTTCCGGAGGATATCCAGATGGTTCGCATTATAATTTGCCCTCATCTGCTGTTCCCTCGCAGCATCAACAGCCCATGCAAATGCCAAGGTTGGCTCCCGGCGGAATGTACCAAGGCATGCCACCCTACTATTGA 1236 0.5194 MDFSKKRKTEENGTDDSVPSTNPLGADDIRRILQPFTQEQLIDLLQAASLHHPDVLESIRSVADRDSALRKLFVRGLAGETTTETLSSVFSSFGPLDEAIVIFDKTTGKSKGYGFVTFKHVDGAILALKEPSKKIDGRMTVTQLAAAGLLASQGTNAAAAATSDVSARKIFVGNVPFDISSERLLSYFLAFGEIEEGPLGFDKGNGKSKGFAFFVYKTEEGAKASLVEPVKTIDGHQVLCKLAMDNKKGKSGGAPNQGPPGLPGNGMAAQQPQPSLPGPMMGSNYGGHGSSYGGFGGAHQGPMAVPGNNYGLQSSLPPYGTQVPSTLTPNSGGGYGPGIGGAYSGSQFSGPTSGDYGARLPPTSAGMPSGGYPDGSHYNLPSSAVPSQHQQPMQMPRLAPGGMYQGMPPYY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1664 411 Gene3D - 61 148 IPR012677 -
Lele16g1664 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 138 IPR000504 GO:0003723
Lele16g1664 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 236 IPR000504 GO:0003723
Lele16g1664 411 MobiDBLite consensus disorder prediction 246 278 - -
Lele16g1664 411 MobiDBLite consensus disorder prediction 346 379 - -
Lele16g1664 411 Gene3D - 151 299 IPR012677 -
Lele16g1664 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 256 IPR000504 GO:0003723
Lele16g1664 411 SUPERFAMILY RNA-binding domain, RBD 161 264 IPR035979 GO:0003676
Lele16g1664 411 SUPERFAMILY RNA-binding domain, RBD 61 143 IPR035979 GO:0003676
Lele16g1664 411 CDD RRM_RBM24_RBM38_like 70 145 - -
Lele16g1664 411 SMART rrm1_1 169 241 IPR000504 GO:0003723
Lele16g1664 411 SMART rrm1_1 71 143 IPR000504 GO:0003723
Lele16g1664 411 CDD RRM_RBM24_RBM38_like 168 243 - -
Lele16g1664 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
Lele16g1664 411 PANTHER GEO13361P1-RELATED 53 303 - -
Lele16g1664 411 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1664 Lele-ChrLele16 9664624 9665859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1664 160 376 C2H2 Transcription Factor Family AT2G19380 30.000 1.20e-16 80.1