Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1662 ATGTCGTCTACTCCATCTTCTTCCTCTAATCGGGTGCTATCTTCCATAAAACTTCATGTCCTTGCTCGCATCAAAAGGTTCATCAGACCCAAAGCGACCCGAGTAAGCTCTGATTCATCTGATCAACTCGACATATCAATTACCAAAGCCGACAGCAACATCGACAAGGTTGAGAATTGTGAATCAGAGACGCAAGCTCTGGAGAAACAGAGTTGCGAGGAGGAGTCTGTGATATCATGGAAGAGGTGTGTGAAGAAGCTTCACTTCGGGAGCTGGGAAGAGAAGGAGATGACGGCGAAAGAGATTGAACGCCTAGCCAAAGAAAATGTCAGCGTGAGAAAGCTGATAACAGAGCTCGGAGTGATGCCGGAGCTGGTGTCAATGGTGGCGTCAGAGGTGGCTGGCCGGCGGCTAGCAGGGCTGAAGGCGTTGGTCCAGCTCGCTCATGGAAGTTACAAAAACAAGGCTTTGATAGTGGAGGCAGGTATATTCCCCAAGCTGCCAAAGAGAATTGACCTTGTAGATGAATCAACAAGGGAATGCGCAGAACTGCTCTTAACATTGTCATCTCTAGCAAACAGCCAATTTCCTATTGCTTCATCAGATTTTCTCCCATTCATTAAAGACATTCTGGAATCAGATTCAAATGTTGAAACCAAGCAATCATGCCTGGGTGCTTTGTGCAACCTCTCAACTGTGTTAGATAATATAGGGCCTTTACTTTCTGCTGGGATTGTGCCAATCCTCTTGGAACTGTCCTCCATTAAAGAGAACTCAGAGAAAGCACTTGCTACTTTGGGGAACTTGGTGGTGACCTTGATGGGGAAAAAGGCAATAGAAAATAGCTTAATGATGCCAGAGAGCTTGATAGAGATCTTGACATGGGAGGATAAACCAAAATGCCAAGAGTTGTCAGCTTATATTCTGATGATTCTAGCTCATCAGAGCTCATCACAAAGAGAGAAGATGGCAAAAGCAGGGATTGTCCCTGTTCTGCTTGAAGTGGCTCTCTTGGGAAGCCAATTAGCTCAGAAGAGAGCACTGAAGCTACTGCAATGGTTCAAGGATGAGAGGCAGTCAAAGATGGGACCACATTCTGGACCACAAACACCAAGAATGGCAATGGGTTCACCTGTAAACCAAACGGAGGCAAAAGAGGGGAAGAGAATTATGAAGAGCTTGGTGAAACAGAGTTTGCATAGAAACATGGAAATTATTGCTCAGAGAGCCAATGCCTCTGGGGATCCTACTAAGTTGAAATCATTGCCTATCAGCACAAGTTCCAAGAGTTTGCCTTACTAA 1302 0.4547 MSSTPSSSSNRVLSSIKLHVLARIKRFIRPKATRVSSDSSDQLDISITKADSNIDKVENCESETQALEKQSCEEESVISWKRCVKKLHFGSWEEKEMTAKEIERLAKENVSVRKLITELGVMPELVSMVASEVAGRRLAGLKALVQLAHGSYKNKALIVEAGIFPKLPKRIDLVDESTRECAELLLTLSSLANSQFPIASSDFLPFIKDILESDSNVETKQSCLGALCNLSTVLDNIGPLLSAGIVPILLELSSIKENSEKALATLGNLVVTLMGKKAIENSLMMPESLIEILTWEDKPKCQELSAYILMILAHQSSSQREKMAKAGIVPVLLEVALLGSQLAQKRALKLLQWFKDERQSKMGPHSGPQTPRMAMGSPVNQTEAKEGKRIMKSLVKQSLHRNMEIIAQRANASGDPTKLKSLPISTSSKSLPY 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1662 433 Gene3D - 281 357 IPR011989 -
Lele16g1662 433 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 433 - -
Lele16g1662 433 MobiDBLite consensus disorder prediction 414 433 - -
Lele16g1662 433 SUPERFAMILY ARM repeat 82 353 IPR016024 -
Lele16g1662 433 MobiDBLite consensus disorder prediction 359 378 - -
Lele16g1662 433 Gene3D - 80 280 IPR011989 -
Lele16g1662 433 MobiDBLite consensus disorder prediction 409 433 - -
Lele16g1662 433 SMART arm_5 191 232 IPR000225 GO:0005515
Lele16g1662 433 SMART arm_5 233 271 IPR000225 GO:0005515
Lele16g1662 433 SMART arm_5 109 149 IPR000225 GO:0005515
Lele16g1662 433 SMART arm_5 151 190 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1662 Lele-ChrLele16 9658225 9660708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1662 93 371 U-box Gene Family AT1G67530 31.469 3.07e-22 97.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1662 16 9658225 9660708 Lele16g1662 16 9658225 9660708 ECH
Lele13g0845 13 20086366 20089020 Lele16g1662 16 9658225 9660708 hybridization
Lele14g0742 14 18474860 18477362 Lele16g1662 16 9658225 9660708 hybridization