Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1653 ATGGGGGATTCGCGCGACTTTCTCACGCCGCCTGTGAACTATTCCCGCCCCATGCCCGTCCGCGAAGATTGTTGGAGCGAGGAAGCTACCTCCACCCTCGTTGACGCTTGGGGCCGCCGCTATATACAGCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGCAGGACGTGGCCGACGCTGTCAACGCTCTACATGGTCATACAAAGAAGACGCATCGGACGGATGTTCAGTGCAAGAACCGCGTCGACACCATTAAGAAGAAGTATAAGGTTGAGAAGAATAGGGTTTCCTCCCCAAACGGGTCTCCTTCCACTTGGCCCTTCTTCGATCGCTTAGACGTTTTGATTGGGCCTGCTTTGAGTGCGAAAAAGGCGTCTCCGTCGCCTCCGGGGGTACTTTCTTTGCCGTATCATAAAACGCCGTCCCCCGCATCTACGTTGCCGGCGCTGCCACAGAAGCGTTCGGCCGCAGCACTATTAGGGGATGGTTTCTTCATGAGGAATTATTCAGCTATGGCAGCCGCGGCAGCTGCAGCAGAGGCTGATGAGGATGAAGACGATGAAGAGGATGAAGATGAAGAGAGGGGAAGCGAGGTTGAGGAAGAAGAGAGGGAGAAGGAAGGGATGAGGAGCTTGGCAAAAGCAATAGAGAGGTTCGGGGAAGTTTATGAGAGAATGGAGAGAGAAAAATTGAGGCAGATGGTGGATTTAGAGAAACAGAGGATGCAGTTTAGTAAAGATTTGGAAGTACAAAGGATGCATATGTTCATGGACGCGCAGGTTCAGTTGGGGAGGATCAAACGCGGGAAGCGATCTGGTTCTAATGGTGAGTTAGAGCTTTCTCCTTCTCTTCATAAACTTTAG 864 0.5243 MGDSRDFLTPPVNYSRPMPVREDCWSEEATSTLVDAWGRRYIQLNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRVDTIKKKYKVEKNRVSSPNGSPSTWPFFDRLDVLIGPALSAKKASPSPPGVLSLPYHKTPSPASTLPALPQKRSAAALLGDGFFMRNYSAMAAAAAAAEADEDEDDEEDEDEERGSEVEEEEREKEGMRSLAKAIERFGEVYERMEREKLRQMVDLEKQRMQFSKDLEVQRMHMFMDAQVQLGRIKRGKRSGSNGELELSPSLHKL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1653 287 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 16 270 IPR044823 -
Lele16g1653 287 MobiDBLite consensus disorder prediction 267 287 - -
Lele16g1653 287 MobiDBLite consensus disorder prediction 179 200 - -
Lele16g1653 287 MobiDBLite consensus disorder prediction 176 210 - -
Lele16g1653 287 Coils Coil 209 229 - -
Lele16g1653 287 MobiDBLite consensus disorder prediction 123 149 - -
Lele16g1653 287 Pfam Myb/SANT-like DNA-binding domain 22 114 IPR044822 -
Lele16g1653 287 Gene3D - 25 91 - -
Lele16g1653 287 FunFam trihelix transcription factor ASIL2 25 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1653 Lele-ChrLele16 9594204 9595067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1653 21 275 Trihelix Transcription Factor Family AT3G14180 32.059 2.13e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele16g1653 Myb_DNA-bind_4 3.9e-25 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1653 16 9594204 9595067 Lele16g1653 16 9594204 9595067 ECH
Lele15g1623 15 9637014 9640411 Lele16g1653 16 9594204 9595067 ECH
Lele13g0855 13 20158200 20159476 Lele16g1653 16 9594204 9595067 hybridization
Lele14g0752 14 18545793 18546662 Lele16g1653 16 9594204 9595067 hybridization