Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1646 ATGGATGCATATGGAATGGAAAAAACTTCAAATGTCAAACAAGCAGCAGTTCATGATGCGATTAGATCATGTTCCTTCGTGTCTGTTTCTGGGTTTCTTCCTCATCTTCTTCTCCTTACCTCCCTTTTAGGTGTGTTTCCAACTAGGTTTGTGAAAGTTCTTTTCTTTCTCATTCTAGATGCAAGGAAGCTATCATATCTTGAGCATTATTATTACAGAATAATGGCAATGTCGTCATCAGAAGGAATATTTCAGATCGAAGACAAGAAGAACAGCAGGTGTACCGAGGAAACTTCATTGGGATCTTCTCAGACATGCTCGTCCTTTGACTTGAATGAAGGAGCAAGAATAGAAGAAGACAACAACGGAACAGACTGTGATATCATGGCTGAGGAGAATGATGATGATGGTGATGAAGAGAAAGCAAAGGATAATAATGAAGAAAGTGTTTCAACTAATAGAAGCACTAACGAAAGAAGAAGAACGGTGAGACAGTATGTTAGATCAAAGATGCCTCGCCTTCGATGGACTCCTGAACTTCATCTCTCCTTTGTTCAAGCTGTTGAAAAGCTTGGTGGTCAAGAGAGAGCCACACCCAAGTTGGTGCTTCAGCTAATGAATGTGAGAGGGCTTAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTTGATGAGGCCGGGCAAGTTGTTGGTGGAACACACAGATCCACCCAAACGGAAGGTCTTGGGCCGAGACCTCATCAATATCTGAAGATGGGAAACGGTGGAATCATCCTCGCAAGTAATTGCAGCGACCAAACTAGTCTCTTTCTGCCCTCCTTCTTCGCCCCATCACCTCCACATCATACTACAAAGCCTACTCATTCATGGCAGCAATTACAGTGGCACTTGATGGATCATCAGCCTATAAACTCCAAGATAACGCACAAGAAACGCAGCACCGCCCAATTTCAGCTGGAAGAAAATAGGATGAACGCTCGTCAATGGAAGTTCAAAAGGTTTCCCACTAATGCCACCTCAAAACCAGATCAACATCATTCCAACTTCAAGCTGGATTTTGAGCCCCCGTTTCGGATCCAGCTGAATGAAGCGATGATGCGGCAAGAAAAGCAATGGCTGCCTGATCTGCAATTGGGGCTCAGTCTGGGAGGGGGCAAAGACCCCCAAGAAATTAGCACTGAGCTTTCACTTTCCTAG 1212 0.4422 MDAYGMEKTSNVKQAAVHDAIRSCSFVSVSGFLPHLLLLTSLLGVFPTRFVKVLFFLILDARKLSYLEHYYYRIMAMSSSEGIFQIEDKKNSRCTEETSLGSSQTCSSFDLNEGARIEEDNNGTDCDIMAEENDDDGDEEKAKDNNEESVSTNRSTNERRRTVRQYVRSKMPRLRWTPELHLSFVQAVEKLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVVGGTHRSTQTEGLGPRPHQYLKMGNGGIILASNCSDQTSLFLPSFFAPSPPHHTTKPTHSWQQLQWHLMDHQPINSKITHKKRSTAQFQLEENRMNARQWKFKRFPTNATSKPDQHHSNFKLDFEPPFRIQLNEAMMRQEKQWLPDLQLGLSLGGGKDPQEISTELSLS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1646 403 Pfam Myb-like DNA-binding domain 174 224 IPR001005 -
Lele16g1646 403 MobiDBLite consensus disorder prediction 143 162 - -
Lele16g1646 403 Gene3D - 171 228 - -
Lele16g1646 403 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 172 227 IPR006447 GO:0003677
Lele16g1646 403 MobiDBLite consensus disorder prediction 124 142 - -
Lele16g1646 403 FunFam Myb family transcription factor 170 228 - -
Lele16g1646 403 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 149 329 - -
Lele16g1646 403 SUPERFAMILY Homeodomain-like 170 226 IPR009057 -
Lele16g1646 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 228 IPR017930 -
Lele16g1646 403 MobiDBLite consensus disorder prediction 117 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1646 Lele-ChrLele16 9554918 9561289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1646 163 243 G2-like Transcription Factor Family AT2G42660 70.370 2.81e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele16g1646 Myb_DNA-binding 3.3e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g1646 16 9554918 9561289 Lele16g1646 16 9554918 9561289 ECH
Lele15g1616 15 9604067 9606255 Lele16g1646 16 9554918 9561289 ECH
Lele13g0861 13 20195647 20197840 Lele16g1646 16 9554918 9561289 hybridization
Lele14g0759 14 18582119 18585908 Lele16g1646 16 9554918 9561289 hybridization