Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g1645 ATGGTATTGGTTGTAATGGCTTTGTTAAAGTTCCGGGCTAGAATAGATTCTGATCCTCATGGAGCTTTGGCTAACTGGAAACCAGATGATCTTGATCCTTGTAACTGGGTGGGTGTTCAATGCGTTGACAATACAGTACAAATGCTGAACTTAAGTGGGCTATCTTTGGAAGGTACTCTGGCTCCCGAGCTTGGAAAACTAAGTAACTTAAAATATCTTCTATTATGCAAAAATAAGTTTTCTGGCACCATTCCTAAAGAACTTGGAGACCTAACGAAGCTGGAGTTGTTGGATTTGAGGGACAACAGCTTGACTGGAAGTGTTCCAGCAGAAATTGGAAGGATGTTGTTCCTAAAAGACTTGTTTCTTTTTAGCAACAACATGGAAGACAGTGTTCGTCAAGATCTTGGGAAGCTTGAATTACTCCCTAATCCACAATTGATTGACAATCATACACCTCATCAGACAGATGAAATTTGTTGCATGAATAGAAAACTTGGACACTGCGTGTGGCCGGGTAATTTCAAAGCATGGAACATGAGGCAATCTCTTGTCATTCCAATTAAAGGAGCAATTACAAAATACCTCAATTCCTTGACACTGCCATTGTTCAAGATAAAGAAGTACCATAATTATGAAGAGAACTGCTTTGACAATCAGCCTAGTGAGTTAGCAATTGCTCAAATGCGTCGTAAATTACTTGATCAGTCCAATAACCTTGAAGCTGTACCTTTTAGTGGTGGGTCTACCACAAAACAGATCATTAGTCTCCTAACTACACTGAGTAGTGGAGCTTTTCCAGCTACATTAAATACAGGCAAGAATCAAAATCAGTCACCTGCACCGTTGCCTTCACTAGCTTCTTCTGGAAGTGAAACAAATCAACAACCTTCAGCTAAAGATGAGGCTTCTGGAGATGCTTGGAAGTATATAATTATTATATCAGGCATACTTGTGTTGGTCATTGTTACTATTGTCATATTTTGCCTGTGGAATAAGAGAGCAGTAAAAGCAATTAGGCCATGGAAGACGGGATTAAGTGGACAGTTACAAAAAGCTTTTGTGACAGGTGTCCCTAAGCTAAATCGAGCAGAGTTGGATGTAGCTTGTGAGGATTTCAGCAATATTGTTATAAGTTTGCCTTATTGCACTATATACAAAGGAACCCTTTCTAGTGGAGTCGAGATTGCTGTTACATCAACTCTGATTACTTCTGCCCAAGAATGGTCAAAGAATATGGAGATTGCCTATCGAAAAAAGATTGATTCCTTGTCTCGGATAAATCATAAGAACTTTATCAATCTTATCGGTTACTGTGAGGAAGAAGAGCCATTTACTAGGATGATGGTGACTGAGTATGCTCCAAATGGATCCCTATTTGAGCATTTGCATGGTAATATTCTTTCTCTTAGTGATTTTGTTGTTGAGGGGCTTGAACACCTTGATTGGAATGCGAGGATGAGGGTTATTATGGGCGTGGCTTATTGTCTTCAATACATGCACCATGACCTGAATCCACCAATAGCTCATCCTAGACTCAATTCACAATTAGTCTTGTTAACAGATGATTTTGCGGCAAAGCTCATGTTTACTCCATCAACTGAAGATAAATCAAATTCAAAAAATTCTGAATTGCCATTAGATGCTGAATTTGAGACGAATGTTTATTGCTTTGGAAAATTGTTATTCGAAATCATTTCTGGGAAATTACCAGACTGTGAAGAACAAGGACAACTTGAGAAATTGGCTGCTGAATTTTCAAACGGTAAGAGAAGCATCAGTTACATGATCGATCCTTCTCTTGAATCCTTCAAAGAGAAAGAACTTGAAGTGATTTGTGAGGTGATCCATGAATGTACTCAACCTAGTCTGAGTTTGAGACCCACAATGAAGGACATAACCTCCAAATTAAAGGATGTTATCAGTATATCACCTGATCAATCAGCCCCAAGACTTTCTCCACTCTGGTGGGCCGAATTAGAGATCTTGTCAGAAGAGGCAACATAA 2007 0.3911 MVLVVMALLKFRARIDSDPHGALANWKPDDLDPCNWVGVQCVDNTVQMLNLSGLSLEGTLAPELGKLSNLKYLLLCKNKFSGTIPKELGDLTKLELLDLRDNSLTGSVPAEIGRMLFLKDLFLFSNNMEDSVRQDLGKLELLPNPQLIDNHTPHQTDEICCMNRKLGHCVWPGNFKAWNMRQSLVIPIKGAITKYLNSLTLPLFKIKKYHNYEENCFDNQPSELAIAQMRRKLLDQSNNLEAVPFSGGSTTKQIISLLTTLSSGAFPATLNTGKNQNQSPAPLPSLASSGSETNQQPSAKDEASGDAWKYIIIISGILVLVIVTIVIFCLWNKRAVKAIRPWKTGLSGQLQKAFVTGVPKLNRAELDVACEDFSNIVISLPYCTIYKGTLSSGVEIAVTSTLITSAQEWSKNMEIAYRKKIDSLSRINHKNFINLIGYCEEEEPFTRMMVTEYAPNGSLFEHLHGNILSLSDFVVEGLEHLDWNARMRVIMGVAYCLQYMHHDLNPPIAHPRLNSQLVLLTDDFAAKLMFTPSTEDKSNSKNSELPLDAEFETNVYCFGKLLFEIISGKLPDCEEQGQLEKLAAEFSNGKRSISYMIDPSLESFKEKELEVICEVIHECTQPSLSLRPTMKDITSKLKDVISISPDQSAPRLSPLWWAELEILSEEAT 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g1645 668 MobiDBLite consensus disorder prediction 269 300 - -
Lele16g1645 668 Gene3D Phosphorylase Kinase; domain 1 343 453 - -
Lele16g1645 668 SMART tyrkin_6 376 637 IPR020635 GO:0004713|GO:0006468
Lele16g1645 668 Gene3D Ribonuclease Inhibitor 5 168 IPR032675 -
Lele16g1645 668 SUPERFAMILY Protein kinase-like (PK-like) 382 636 IPR011009 -
Lele16g1645 668 FunFam Nuclear pore complex protein NUP107 4 155 - -
Lele16g1645 668 FunFam Inactive receptor-like serine/threonine-protein kinase 345 453 - -
Lele16g1645 668 Pfam Protein tyrosine and serine/threonine kinase 383 637 IPR001245 GO:0004672|GO:0006468
Lele16g1645 668 Gene3D Transferase(Phosphotransferase) domain 1 543 644 - -
Lele16g1645 668 Gene3D Transferase(Phosphotransferase) domain 1 454 542 - -
Lele16g1645 668 PANTHER PROTEIN MALE DISCOVERER 2 5 665 - -
Lele16g1645 668 Pfam Leucine rich repeat N-terminal domain 7 41 IPR013210 -
Lele16g1645 668 ProSiteProfiles Protein kinase domain profile. 336 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele16g1645 668 SUPERFAMILY L domain-like 7 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g1645 Lele-ChrLele16 9542608 9549558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g1645 23 648 Receptor kinase-like Gene Family AT5G56040 26.888 4.40e-39 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lele16g1645 PK_Tyr_Ser-Thr 6.1e-13 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1615 15 9589275 9596146 Lele16g1645 16 9542608 9549558 ECH
Lele16g1645 16 9542608 9549558 Lele16g1645 16 9542608 9549558 ECH
Lele13g0862 13 20203973 20209121 Lele16g1645 16 9542608 9549558 hybridization
Lele14g0760 14 18594516 18599386 Lele16g1645 16 9542608 9549558 hybridization