Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele16g1643 | ATGGAGTGCGTGAAAGGTGGAGAGCTTTTGGCCAAAGTTCTCAAAGGGAAGCTTAAGGAAGACTTGGCCAGAAAGTACTTTCAGCTCATCGGAGCTGTAGATTTCTGCCATAGCAGAGACGTGTACCACCGTGACCTGAAACTAGAGAATCTTATTCTTCTAGACGAAAATGGGTATCTTAAAGTTTCAGACTTTGGACTAAGTGCGTAATTAGTAAAGCAAAGTTTACGTGTCCATTATGGTTCCCACCTGAGGCCAGAAAGCTTCTCTCCAGAATCCTTGATCCAAACCCCTAGAGTAAGAGTGACTATCTCCCAGATGAAGGAAACACCATGGTTCAGAAAGGGATATCAGCAGATTGAAGCACCTCTGTTGCTACAATCGCTTTCTTGGAATGATGACTTCGTGCCCAAAAACGAAGCACAAAGATCCATGAAACCACCTAGTTTCAATGCATTTGAGATCATATCTCTGTCTTCAGGATTTGACCTTTCTCCTATGTTTGAGAATAACAAGATTTCAAGGCACGAGGCAAGATTCACCACCACGAAAGAAGCCTCCGCGATTGTGTCAAAACTGGAGGAGATAGCTCAGGTCGATGGCAAATTCAAGGTTTTGAAGAGAAATGGTACAGTGAAATTGCAGGGTAGCAAGGTAGGGAGAAAGGGGCAACTTGGAATAGACGCAGAGATTTTTGAAGTAACGTCGTCGTTTCATATTGTGGAGGTGAAGAAAAGAGCAGGAGACACATTAGAATACATAGCATTCAGAGACCACAACTTAAAACCTTGTCTAAAGGATATAGGACGGGAATGGCGAGGAAGTGGGCATGATGGATAG | 840 | 0.4357 | MECVKGGELLAKVLKGKLKEDLARKYFQLIGAVDFCHSRDVYHRDLKLENLILLDENGYLKVSDFGLSAXLVKQSLRVHYGSHLRPESFSPESLIQTPRVRVTISQMKETPWFRKGYQQIEAPLLLQSLSWNDDFVPKNEAQRSMKPPSFNAFEIISLSSGFDLSPMFENNKISRHEARFTTTKEASAIVSKLEEIAQVDGKFKVLKRNGTVKLQGSKVGRKGQLGIDAEIFEVTSSFHIVEVKKRAGDTLEYIAFRDHNLKPCLKDIGREWRGSGHDG | 279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele16g1643 | 279 | SMART | serkin_6 | 1 | 113 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lele16g1643 | 279 | FunFam | Non-specific serine/threonine protein kinase | 145 | 269 | - | - | |
| Lele16g1643 | 279 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 41 | 53 | IPR008271 | GO:0004672|GO:0006468 | |
| Lele16g1643 | 279 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 95 | - | - | |
| Lele16g1643 | 279 | CDD | CIPK_C | 151 | 266 | - | - | |
| Lele16g1643 | 279 | Pfam | NAF domain | 147 | 206 | IPR004041 | GO:0007165 | |
| Lele16g1643 | 279 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 1 | 79 | - | - | |
| Lele16g1643 | 279 | Gene3D | Kinase associated domain 1, KA1 | 144 | 269 | - | - | |
| Lele16g1643 | 279 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 137 | IPR011009 | - | |
| Lele16g1643 | 279 | Pfam | Protein kinase domain | 1 | 77 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lele16g1643 | 279 | ProSiteProfiles | Protein kinase domain profile. | 1 | 279 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lele16g1643 | 279 | ProSiteProfiles | NAF domain profile. | 145 | 169 | IPR018451 | GO:0007165 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele16g1643 | Lele-ChrLele16 | 9534314 | 9535349 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele16g1643 | 1 | 274 | CBL-interacting serine-threonine protein kinases | AT5G45820 | 43.275 | 3.15e-70 | 221 |
Transcription factors information