LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele16g1634	ATGGCCGACGATAAGGAAATGTCTGCCTCTGTCAATGGGAATGAGTCACTCACCGGACACATCATATCTACAACAATCGGAGGCAAAAATGGGGAGCCCAAACAGACTATTAGTTACATGGCAGAACGTGTTGTGGGAACTGGATCATTTGGGATTGTTTTCCAGGCAAAATGCTTAGAAACTGGTGAGGCAGTGGCCATTAAGAAGGTTTTACAAGACAGAAGATACAAAAATCGTGAACTACAGCTAATGCGAGTGATGGACCATCCAAATGTGATCTCCTTGAAGCATTGCTTCTTTTCCACTACAAGTACAAATGAGCTATATCTTAATCTGGTGATGGAATACGTTCCCCAGAGCCTTTATCAGGTCATAATGCATTATAGCAATGCTAATCAGAGAATGCCACTTATTTATGTAAAACTTTATATGTACCAGATTTTCAGGGGTTTGGCTTATATCCACACTGTTCCAGGAGTTTGTCACAGAGATTTGAAGCCTCAAAATATCCTGGTTGATACTCATACACATCAGGTTAAGCTTTGTGATTTTGGAAGTGCAAAAGTGCTGGTCAGAGGGGAAACTAATATATCATACATATGTTCACGCTTCTATCGAGCTCCAGAACTTATATTTGGTGCCACAGAGTATACTACCTCAATTGACATTTGGTCAGCTGGCTGTGTCCTAGCTGAACTTCTCTTAGGCCAGCCATTGTTTCCCGGTGGAAGTGCAGTAGACCAGCTTGTGGAGATTATAAAGGTTCTCGGAACACCCACCCGGGAGGAAGTCCGTTGTATGAATCCCAATTACAATGATTTTAGGTTCCCCCAGCTAAAAGCACGCCCATGGCATAAGATATTCCACAAAAGGATGCCTCCAGAAGCAATTGATCTTGTTTCCCGGCTTCTGCAGTACTCCCCAAGTCTTCGGTGCGCTGCGCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGGGAACCCAATGCTCGCCTGCCAAATGGGCGTCCATTTCCAGTGTTATTCAACTTCGGACAGGAATTAGCTGGAGCATCACCAGAACTTGTTAATAAGTTGATACCAGACCATGTGAAGCGGCAAATAGGGCTACAATTCACCCATCTGACAGGAACATGA	1140	0.4395	MADDKEMSASVNGNESLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSTNELYLNLVMEYVPQSLYQVIMHYSNANQRMPLIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDTHTHQVKLCDFGSAKVLVRGETNISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGGSAVDQLVEIIKVLGTPTREEVRCMNPNYNDFRFPQLKARPWHKIFHKRMPPEAIDLVSRLLQYSPSLRCAALEACAHPFFDELREPNARLPNGRPFPVLFNFGQELAGASPELVNKLIPDHVKRQIGLQFTHLTGT	379

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele16g1634	379	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	160	172	IPR008271	GO:0004672\|GO:0006468
	Lele16g1634	379	Pfam	Protein kinase domain	39	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele16g1634	379	ProSitePatterns	Protein kinases ATP-binding region signature.	45	69	IPR017441	GO:0005524
	Lele16g1634	379	SUPERFAMILY	Protein kinase-like (PK-like)	38	346	IPR011009	-
	Lele16g1634	379	SMART	serkin_6	39	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele16g1634	379	FunFam	Glycogen synthase kinase-3 beta	23	118	-	-
	Lele16g1634	379	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	9	368	-	-
	Lele16g1634	379	FunFam	Shaggy-related protein kinase kappa	119	366	-	-
	Lele16g1634	379	ProSiteProfiles	Protein kinase domain profile.	39	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele16g1634	379	Gene3D	Phosphorylase Kinase; domain 1	24	118	-	-
	Lele16g1634	379	CDD	STKc_GSK3	34	326	IPR039192	-
	Lele16g1634	379	Gene3D	Transferase(Phosphotransferase) domain 1	119	366	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele16g1634	Lele-ChrLele16	9471906	9475290	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele16g1634	43	361	MAP Kinase Gene Family	AT3G59790	35.928	1.45e-58	193

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Lele16g1634		Pkinase	3.3e-65	CL0016